| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2609 |
|---|
| Symbol | |
|---|
| ID | 5870398 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2927337 |
|---|
| End bp | 2928368 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641547732 |
|---|
| Product | ADP-L-glycero-D-manno-heptose-6-epimerase |
|---|
| Protein accession | YP_001668844 |
|---|
| Protein GI | 167033613 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | [TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.580365 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.0683488 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCA TCGTAACCGG CGCCGCGGGA TTCATCGGCA GCAATCTCGT TCAGGCACTC
AACCAACGCA ACGAGACCAA TATCATTGCC GTCGACGATC TGACCGATGG CGACAAGTTC
AGCAACCTGG CCGACAGTGA AATTGCCGAT TACCTGGACA AGGACGATTT TCTCGACCGG
TTCGGTCGCG GCCAGTTTGG CAAGGTGCGC GCCGTTCTGC ACCAGGGTGC GTGTTCAAGC
ACCGTCGAAG GCGACGGTCG TTTCATGATG GACAACAACT ACCGGTTCAG CCGTGAGTTG
CTGACGTCTG CACAGCACCA GGAAATCCCG CTGCTATATG CATCATCGGC CGCCGTATAC
GGCGCAGGAC GCATCTTTAG CGAACAGCGT GAGTGTGAAC GCCCGCTGAA CGTCTATGGC
TATTCCAAGT TTCTGTTCGA TCAACAGGTG CGCCGGCAAC TGACGGCGGC TCGCAGCCAG
GTCGTCGGCT TGCGTTATTT CAATGTCTAC GGGCCCCATG AGCAGCATAA AGGCCCGATG
GCCTCAGTGG CCTTGCACTG CTTCAATCAG TACCAGGCTC GCGGAAAAGT CAGCTTGTTC
GGTAGCTATG GGGACTTCCC CAGCGGTGGC CATCTGCGGG ATTTCGTCTC TGTTGAGGAT
GTGGTCAAGG TCAATATGTT CTTCCTTGAA CGACCACAAC TCAGTGGCAT ATTCAATGTT
GGCAGTGGTC GTGCCCAGCC ATTCAACGAC GTTGCTCTGG CTGTGATCAA TCGGCTGCGC
GAACGGCAAG ACCTACCCCC TTTGTCGCTT GATATGGCCT TGCTTGAGGG GGTACTGGAG
TACAGCGAAT TTCCTGATCA TTTGCGTGGC AAATACCAGT GCTACACCTG TGCCGACCTG
GAGCGCTTGC GCGCTGCTGG TTACAAGGCG CCTACATTGA CAGTCCAGCA AGGCGTGGCC
CGCTACTGTG ACTGGTTGCA GGGTAACCAA AGCCCGCCGC CCGCTCCTTT CAAGCAAGCG
GCGGCAGCTT GA
|
|---|
| Protein sequence | MTIIVTGAAG FIGSNLVQAL NQRNETNIIA VDDLTDGDKF SNLADSEIAD YLDKDDFLDR
FGRGQFGKVR AVLHQGACSS TVEGDGRFMM DNNYRFSREL LTSAQHQEIP LLYASSAAVY
GAGRIFSEQR ECERPLNVYG YSKFLFDQQV RRQLTAARSQ VVGLRYFNVY GPHEQHKGPM
ASVALHCFNQ YQARGKVSLF GSYGDFPSGG HLRDFVSVED VVKVNMFFLE RPQLSGIFNV
GSGRAQPFND VALAVINRLR ERQDLPPLSL DMALLEGVLE YSEFPDHLRG KYQCYTCADL
ERLRAAGYKA PTLTVQQGVA RYCDWLQGNQ SPPPAPFKQA AAA
|
|---|
| |