| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2604 |
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| Symbol | |
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| ID | 5870393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2924234 |
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| End bp | 2924881 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641547727 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001668839 |
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| Protein GI | 167033608 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.526451 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0032525 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGACCTGT CATTGATCCT CCGTACCTAC CCGTTTTTCA TGGAAGCCGC TTGGGTAACT
GTGCAAATTT CATTACTTTC ATTATTACTG GGTTTGGGCC TGGCAATCAT TCTCGTGGCA
GGCAGGTTAT CGCCAGTCAT TATCCTGCGA TGGGCAGCCA AGATTTACGT CAGCGTATTT
CGCGGTACGC CCTGCCTCGT GCAGTTGTTC ATTATCTACT TTGGCGGGCC ACAGATAGGC
ATAGAGCTGG AGCCATTCTC TGCTGCGGTG ATCGGCTTAG GCATGAATAT CGCTGCGTAT
ATGTCCGAGT CCATCAGAGG TGCTATCGAC AACGTCGACC CTGGCCAGGA GGAGGGCGCA
CGGTCAATTG GTTTCAGCCG CAGGCAGACG CTGTTGTTCA TCATCATTCC ACAAGCACTG
AAACTCATGA TCAGGCCGCT TGGCGTCAAT GCCATTGGCC TGATAAAGGG CTCTGCCCTG
GTGTCGGCCA TTTCGGTTGT TGAACTGACA TATACCGCGC AGCGCTTCAT CAGCTCAACT
TACAAACCGT TCGAGATATT CATGGTGTCG GCGTTGCTTT ATATCGTCAT GGTCTACTCG
GTCAAGTACT TGGTGGAAGT ACTGGACCGG CGATACGCGA CCAAGTGA
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| Protein sequence | MDLSLILRTY PFFMEAAWVT VQISLLSLLL GLGLAIILVA GRLSPVIILR WAAKIYVSVF
RGTPCLVQLF IIYFGGPQIG IELEPFSAAV IGLGMNIAAY MSESIRGAID NVDPGQEEGA
RSIGFSRRQT LLFIIIPQAL KLMIRPLGVN AIGLIKGSAL VSAISVVELT YTAQRFISST
YKPFEIFMVS ALLYIVMVYS VKYLVEVLDR RYATK
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