Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2557 |
Symbol | |
ID | 5870346 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 2871193 |
End bp | 2873373 |
Gene Length | 2181 bp |
Protein Length | 726 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641547680 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_001668792 |
Protein GI | 167033561 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.482945 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.0643046 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTAGCC AATCCGATTT GCGCTTCACC TTCCAGCCGC TGGTGGGCCG TAGCGAGTTC GAAGTGGTGT CGTTCGAGCT GGATGAAGCC ATCAGCACAC CATTCCAGTT GCAGCTGGAA CTGATCAGTT TCGAAGACGC TGTCGACTTT GGCCAACTGC TCGACAAACC GGTGTTGTTC ACCATTTGGC GTGGTGAGCG CCCGCTGCGC TATGTGCACG GCCTGGTCAG CACGTTTAGC CAAGGTGAAA CGGGCTTCCA TCGCACCCGC TACCACGCCT TGGTCGAGCC CGTGCTGGCC CGTGCGGGGT TGCGCTCGAA CTGGCGCATC TTCCAGCAGA AAACCGTATC GCAAATCCTC GAAATCATGC TCAAGCGCCA GGGCGTGAAT GCGTACCAGC TCAAGTGCAT CGATCAGCAC CAGGTGCGCG AATTCTGCGT GCAGGCCGGT GAAACCGACC TCGATTTCAT TGCTCGCCTG GCCGCCGAAG AGGGCCTCGT CTACCGCTTC GAGCACACGC CGAAAGGCCA CACGCTGATC ATCACCGACC GGCTGCTGGC GCTGGGGCAG ATCAGCCAGG GCGTCATCAA GGCCGACGAC GAGGATGAAG GTTTCTTCGA ACAGGCTGAC ATCGACCCCA ACCAGGTGCT GTACCACGCC AACAGTGCTG GCGATCAGGC AATACCCTGC CTGCGCCACC TGCGCTACAG CGAGCAGGTA CGTACCGCGC GCCAGGTTCA GCGCGACCAC ACCTTCACCC ACCCGGCTTA TCGCCTGGAG CTACGCGCCG AGGGCGGCGA CCTGGCGCAC CAGTCCACCG CCTACGAACG CTTCGACTAC CCCGGCCGCT ACAAGCGCGA GGCGGTCGGC GTGCCTTTCA CCGCCACCCG CATCACGGCC CTGCGCCATG ATGCCCGCAT GGCCGAGGTG GAAGGCGACG ATGTGCGCCT GCAACCGGGG CTGAGTTTCA CCCTGATCGA GCACCCGCGC GAAGACCTGA ACCTGCATTG GCGGGTCACC CGCGTGCACC ACGAGGGCAC CCAGTTCACC AGCCTGCAGG AAGAGGCAGC AGGTGCGCAG CTAGGCACCC GCTACAAGCA GGACGCCGTG CTGGTCCCCG GCAGAACCGA ATGGCGCCCG GCCCCCTTGC CCAAACCGCG CATCGACGGC CCGCACATGG CCACGGTGGT GGGGCCGAAG GGCGAGGAAA TCTACTGCGA CCAATGGGGC CGGGTGAAGG TCAGCTTTCC TTGGGACCGG GAGAGCGAAA ACAACGAGTT CAGCTCCTGC TGGGTACGCG TGTCGCAGGG CTGGGCCGGT GGTAGCTGGG GTTCGATGGC CATTCCGCGC ATTGGCCAGG ACGTGATCAT CCAGTACGTC AATGGCGACC CGGACCAGCC GATGATCACC GGGCGCACCT ACTGCGGCAA CCAGCTGCCG CCCTATGACC TGCCCGAACA CAAGACACGC ATGACCATCA AAAGCCAGAC CCATAAAGGG GATGGGTTCA ACGAACTGCG TTTCGAAGAC GAGTTAGGCA AAGAGGAAGT GTTCATTCAT GCCCAGCGGG ACCAGAACAA TGTGGTCGGC AATGATGAGT CCACGCGAGT GGGCAACGAC CGCACCGAAC GCGTCGAACG AGATGAGACA ATTTCGATTG GGCAGAATCG CCTCGAAGAC GTTGCCCGGG ACGAGTCCGT CAGCATTGGC CAGAACCGAA CACACGAAAT TGGCAACGAC GACAGCCTGA GCATTGGTCG CACCCATACC ATTATCACGG GCAAGGACCG AATCGAACAC GTTGGGAATC AGCGACAGGA CATCACCAAG GCCAACCACA CGGTAGAAAT CGGCGGCCAC CTCGAACAGG TCGTGGGCGG TCACAACACC TTGCAAACCG GCGAAGCCAT CCGGCACACC ACCAAGGTCT ATGACATCCA GGTCAGTGAA AGCCTGACCA TCAGGAGCCC GGCGGGCCTG CTGCGAATCG ATGGCGCCGG TATCACGCTG GACGGCCTGG CGCTGGCCTT CAAGGGGCCG GTCAACCAGC AGGCAACCGG GAGTCATCGC ACCACTTCAA CACCTGGCGT ACCTGAGCCC GGCGAACCCA TATGTCTCAG TTGCCTGCTG AAAGCGATCG CAGACGGCCA CAACATGATT CGCATGGAAG GAGCAAGCTG A
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Protein sequence | MSSQSDLRFT FQPLVGRSEF EVVSFELDEA ISTPFQLQLE LISFEDAVDF GQLLDKPVLF TIWRGERPLR YVHGLVSTFS QGETGFHRTR YHALVEPVLA RAGLRSNWRI FQQKTVSQIL EIMLKRQGVN AYQLKCIDQH QVREFCVQAG ETDLDFIARL AAEEGLVYRF EHTPKGHTLI ITDRLLALGQ ISQGVIKADD EDEGFFEQAD IDPNQVLYHA NSAGDQAIPC LRHLRYSEQV RTARQVQRDH TFTHPAYRLE LRAEGGDLAH QSTAYERFDY PGRYKREAVG VPFTATRITA LRHDARMAEV EGDDVRLQPG LSFTLIEHPR EDLNLHWRVT RVHHEGTQFT SLQEEAAGAQ LGTRYKQDAV LVPGRTEWRP APLPKPRIDG PHMATVVGPK GEEIYCDQWG RVKVSFPWDR ESENNEFSSC WVRVSQGWAG GSWGSMAIPR IGQDVIIQYV NGDPDQPMIT GRTYCGNQLP PYDLPEHKTR MTIKSQTHKG DGFNELRFED ELGKEEVFIH AQRDQNNVVG NDESTRVGND RTERVERDET ISIGQNRLED VARDESVSIG QNRTHEIGND DSLSIGRTHT IITGKDRIEH VGNQRQDITK ANHTVEIGGH LEQVVGGHNT LQTGEAIRHT TKVYDIQVSE SLTIRSPAGL LRIDGAGITL DGLALAFKGP VNQQATGSHR TTSTPGVPEP GEPICLSCLL KAIADGHNMI RMEGAS
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