| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2539 |
|---|
| Symbol | |
|---|
| ID | 5870328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2852019 |
|---|
| End bp | 2852909 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641547662 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001668774 |
|---|
| Protein GI | 167033543 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.00516112 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG ATGACATGGA CGCCTTCGTG GCGGTCATCC GCTGCCAGTC GACCAACCTC
GCCGCCGAGG CCCTGCAGCT GACTCAACCG GCCATCACCC GCCGCGTACA GAACTTCGAG
GAAGACCTGG GCGCCACCCT GCTCGACCGC AACACCAAGC CTCTCAAACC GACCCCCATG
GGCCTGCGCG TGTACGAACA GTGCAAAGCC ATTTTGCGCG AGATCGACTC GCTGCGCGAG
CTGGTGGCCA ACGACGGAGC GCCTTCCGGG ACCCTGCGGC TGGGCGTGCC GCAAACCCTG
GGTGATGTGG TGCTGCTCGA TGCCCTGGCG CAAATCCGCG AAACCTACCC GGACCTGCGC
ACCCAGGTCA CCAGCGGCTG GGGCAGCAGC CTGATCGCGC GCATGGAAAA TGGCGAACTC
GACGCTGCCG CTGCGCTGTT CCCGCCGGGC AAGATCTTCC CCGAGGGCAT CGCCAGCCAG
TCGATCGCAC GCATGCCACT GCGGGTAGTT GCAGCCAAAG GCAGCACCGG CAAGCGCAGC
CTCAAGCTCA AGGACTGCTA CACCCGTGGC TGGGTGCTCA ACCCCGATGG CTGCGGCTTC
CGCGCGGGGC TGCAGCGCGC CCTGAGTGAA CAGGGGCTGA GCTTGTCGAT CAACCTGGAG
ACCTTTGGTA CCGAGTTGCA ATTGGGGCTG GTGGCCAATG GGCAGGGGCT TGGCCTCGTG
CCTGAGCCGT TGTTGCAGAA CAGCCGCCAT CGGGACGCGC TGGATGTGGT CAATGTAACG
GACTTCAAGC CCCAGGTGGA TTTGTGGCTG TTCCACCCGC GCTACCTGGG CAACCTGCAG
GAGCCGGTGG AGCTGTTTGG CCGGGTGGCC GGGCAACAGT TGTGTGGGTG A
|
|---|
| Protein sequence | MKIDDMDAFV AVIRCQSTNL AAEALQLTQP AITRRVQNFE EDLGATLLDR NTKPLKPTPM
GLRVYEQCKA ILREIDSLRE LVANDGAPSG TLRLGVPQTL GDVVLLDALA QIRETYPDLR
TQVTSGWGSS LIARMENGEL DAAAALFPPG KIFPEGIASQ SIARMPLRVV AAKGSTGKRS
LKLKDCYTRG WVLNPDGCGF RAGLQRALSE QGLSLSINLE TFGTELQLGL VANGQGLGLV
PEPLLQNSRH RDALDVVNVT DFKPQVDLWL FHPRYLGNLQ EPVELFGRVA GQQLCG
|
|---|
| |