Gene PputGB1_2538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_2538 
Symbol 
ID5870327 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp2850672 
End bp2851808 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content68% 
IMG OID641547661 
Productacyl-CoA dehydrogenase type 2 
Protein accessionYP_001668773 
Protein GI167033542 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.844573 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00557828 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGTCACC CCCCTTCCGC CAGCGCACTA GCCGAACTCA CCCAGGCCCT GGCCAGCAAT 
GCCGAGCGCT ACGACCGCAG CGGCCAGTTC CCCGTCGACA ACTTCACCCT GCTGCACCGC
CACGGCCTGC TGAGTTTCAC CGTGCCGCGC GCCCTGGGCG GTGGCGGGGC CGACCTGGCC
AGCGCACGCC TGGTGATCAC CGCCGTCGGC AAAGGCTGCC CGTCCACCGC ATTGATCCTG
GTGATGCAGT ACCTGCAGCA CTTGCGCCTA CAGGACGAGG ATCGCTGGCC CGAGCACCTG
CGCCTGCAAG TGGCACGCGA CGCGGTGGCC AACGGCGCGC TGATCAACGC CTTTCGCGTC
GAGCCGGAAC TGGGCACACC GGCACGCGGT GGCTTGCCGG CGACCACCGC TCGGCGCACC
GCCGAGGGCT GGCGGTTGTC CGGGCGCAAA ATCTACTCCA CCGGCAGCCA TGGCCTGAGC
TGGTACCTGG TGTGGGCCCG CAGCGACGAC CAGGACCCCC TCGTAGGCGG CTTCCTGGTA
CACAAGGACA CCCCTGGCAT CCGTATCGTC GAAGACTGGG ACCACCTGGG CATGCGTGCC
ACCTGCAGCC ATGAAGTGCA GTTCGACGAG GTGCTGATCC CGTTGGAGCA TGCCGTCAGC
GTCAGCCCGG CCAGCGCACC ACGCCCCGAA CTCGACAGCA CCGGCCTGCT GTGGATGGCA
GTGTTGCTGC CTGCACTGTA CGACGGTGTG GCCCAGGCCG CACGTGACTG GCTGGTGCAG
TTCCTGAACC AGCGGGCGCC GTCCAACCTG GGGGCACCGC TGGCCAGCCT GGCGCGTTTC
CAGGACGTGG TCGGACGCAT CGACACGCTG CTGTTCGCCA ACCAGAGCCT GCTGAACGCC
GCCGTCAGCG GGCAGACCGA GCCGCGCCAT GCCGGGCAAC TCAAGCACCT GGTCAGCCGC
AATGCCATCC AGGCTGTGGA GCTGGCCATC GAGGCTGCCG GTAACCCTGG CCTGTCACGG
CGCAACCCGT TGGAGCGGCA CTATCGCGAT GTGCTGTGCA GCCGCATCCA CACCCCCCAG
GATGACGTAG TACTTGGCCA GGTCGGCCGT GCAGCCTTGG CGGAGGTGGC AGCATGA
 
Protein sequence
MSHPPSASAL AELTQALASN AERYDRSGQF PVDNFTLLHR HGLLSFTVPR ALGGGGADLA 
SARLVITAVG KGCPSTALIL VMQYLQHLRL QDEDRWPEHL RLQVARDAVA NGALINAFRV
EPELGTPARG GLPATTARRT AEGWRLSGRK IYSTGSHGLS WYLVWARSDD QDPLVGGFLV
HKDTPGIRIV EDWDHLGMRA TCSHEVQFDE VLIPLEHAVS VSPASAPRPE LDSTGLLWMA
VLLPALYDGV AQAARDWLVQ FLNQRAPSNL GAPLASLARF QDVVGRIDTL LFANQSLLNA
AVSGQTEPRH AGQLKHLVSR NAIQAVELAI EAAGNPGLSR RNPLERHYRD VLCSRIHTPQ
DDVVLGQVGR AALAEVAA