Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2538 |
Symbol | |
ID | 5870327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 2850672 |
End bp | 2851808 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641547661 |
Product | acyl-CoA dehydrogenase type 2 |
Protein accession | YP_001668773 |
Protein GI | 167033542 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.844573 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.00557828 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGAGTCACC CCCCTTCCGC CAGCGCACTA GCCGAACTCA CCCAGGCCCT GGCCAGCAAT GCCGAGCGCT ACGACCGCAG CGGCCAGTTC CCCGTCGACA ACTTCACCCT GCTGCACCGC CACGGCCTGC TGAGTTTCAC CGTGCCGCGC GCCCTGGGCG GTGGCGGGGC CGACCTGGCC AGCGCACGCC TGGTGATCAC CGCCGTCGGC AAAGGCTGCC CGTCCACCGC ATTGATCCTG GTGATGCAGT ACCTGCAGCA CTTGCGCCTA CAGGACGAGG ATCGCTGGCC CGAGCACCTG CGCCTGCAAG TGGCACGCGA CGCGGTGGCC AACGGCGCGC TGATCAACGC CTTTCGCGTC GAGCCGGAAC TGGGCACACC GGCACGCGGT GGCTTGCCGG CGACCACCGC TCGGCGCACC GCCGAGGGCT GGCGGTTGTC CGGGCGCAAA ATCTACTCCA CCGGCAGCCA TGGCCTGAGC TGGTACCTGG TGTGGGCCCG CAGCGACGAC CAGGACCCCC TCGTAGGCGG CTTCCTGGTA CACAAGGACA CCCCTGGCAT CCGTATCGTC GAAGACTGGG ACCACCTGGG CATGCGTGCC ACCTGCAGCC ATGAAGTGCA GTTCGACGAG GTGCTGATCC CGTTGGAGCA TGCCGTCAGC GTCAGCCCGG CCAGCGCACC ACGCCCCGAA CTCGACAGCA CCGGCCTGCT GTGGATGGCA GTGTTGCTGC CTGCACTGTA CGACGGTGTG GCCCAGGCCG CACGTGACTG GCTGGTGCAG TTCCTGAACC AGCGGGCGCC GTCCAACCTG GGGGCACCGC TGGCCAGCCT GGCGCGTTTC CAGGACGTGG TCGGACGCAT CGACACGCTG CTGTTCGCCA ACCAGAGCCT GCTGAACGCC GCCGTCAGCG GGCAGACCGA GCCGCGCCAT GCCGGGCAAC TCAAGCACCT GGTCAGCCGC AATGCCATCC AGGCTGTGGA GCTGGCCATC GAGGCTGCCG GTAACCCTGG CCTGTCACGG CGCAACCCGT TGGAGCGGCA CTATCGCGAT GTGCTGTGCA GCCGCATCCA CACCCCCCAG GATGACGTAG TACTTGGCCA GGTCGGCCGT GCAGCCTTGG CGGAGGTGGC AGCATGA
|
Protein sequence | MSHPPSASAL AELTQALASN AERYDRSGQF PVDNFTLLHR HGLLSFTVPR ALGGGGADLA SARLVITAVG KGCPSTALIL VMQYLQHLRL QDEDRWPEHL RLQVARDAVA NGALINAFRV EPELGTPARG GLPATTARRT AEGWRLSGRK IYSTGSHGLS WYLVWARSDD QDPLVGGFLV HKDTPGIRIV EDWDHLGMRA TCSHEVQFDE VLIPLEHAVS VSPASAPRPE LDSTGLLWMA VLLPALYDGV AQAARDWLVQ FLNQRAPSNL GAPLASLARF QDVVGRIDTL LFANQSLLNA AVSGQTEPRH AGQLKHLVSR NAIQAVELAI EAAGNPGLSR RNPLERHYRD VLCSRIHTPQ DDVVLGQVGR AALAEVAA
|
| |