Gene PputGB1_2510 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_2510 
Symbol 
ID5870299 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp2817871 
End bp2821050 
Gene Length3180 bp 
Protein Length1059 aa 
Translation table11 
GC content62% 
IMG OID641547633 
Producthydrophobe/amphiphile efflux-1 (HAE1) family protein 
Protein accessionYP_001668745 
Protein GI167033514 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.307051 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.508426 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTTCT CGAAATTCTT CATTACCCGG CCGATCTTCG CCGCGGTGCT GTCGCTGGTG 
CTGCTGATTG CGGGTTCCAT CTCGCTGTTC CAGCTGCCGA TCAGCGAATA CCCCGAAGTG
GTGCCACCCA CCGTGGTGGT GCGCGCCAAC TTCCCCGGTG CCAACCCCAA GGTCATTGGC
GAAACCGTTG CCGCGCCGCT GGAGCAGGCC ATTACCGGTG TGGAGAACAT GCTGTACATG
TCCTCCCAGT CCACTGCTGA CGGCAAGCTG ACGCTGACCA TCACCTTCGC CCTGGGGACC
GACCTGGACA ACGCTCAGGT GCAGGTGCAG AACCGCGTCA CGCGTACCCA GCCCAAACTG
CCCGAGGAAG TGACCCGTAT CGGTATCACC GTCGACAAGG CCTCGCCCGA CCTGACCATG
GTCGTGCACC TGACCTCGCC GGATAACCGC TACGACATGC TTTACCTGTC CAACTACGCC
ATCCTCAACA TCAAGGACGA GTTGGCGCGT CTGGGTGGTG TAGGCGACGT GCAGCTGTTT
GGCATGGGCG ACTACTCGCT ACGCGTGTGG CTGGACCCGA ACAAGACCGC TTCGCGCAAC
CTGACTGCCA GTGATGTAGT GGCCGCGATC CGCGAGCAGA ACCGCCAGGT AGCCGCTGGC
CAGCTGGGCG CCCCGCCCGC CCCCGGCTCC ACCAGCTTCC AGCTGTCGAT CAACACCCAA
GGCCGTCTGG TCAATGAGGA AGAGTTCGAA AACATCATCA TCCGCGCCGG TGCCGATGGC
GAAATTACCC GCCTCAAAGA CATCGCCCGG GTCGAACTTG GCTCCAGCCA GTACGCCTTG
CGCTCGCTGC TGAACAACCA GCCGGCGGTG GCCATCCCGA TCTTCCAGCG CCCAGGCTCC
AACGCCATCG AGATCTCCGA CGAAGTACGG GCGAAAATGG CCGAGCTGAA GAAGGACTTC
CCGGAAGGGA TGGACTACAG CATCGTCTAT GACCCGACCA TCTTCGTGCG CGGCTCCATC
GAAGCAGTGG TGCACACCCT GTTCGAAGCC CTGGTGCTGG TCGTGCTGGT GGTGATCCTG
TTCCTGCAGA CCTGGCGCGC TTCGATCATC CCGCTGCTGG CAGTACCGGT GTCGCTGATC
GGTACGTTTG CGGTGATGCA CCTGTTCGGC TTCTCGCTCA ACGCGCTGTC GTTATTCGGG
CTGGTGCTCG CCATCGGTAT TGTGGTGGAC GACGCCATCG TCGTGGTGGA GAACGTCGAG
CGTAATATCG GGCTCGGCCT GAAACCGCTG GAAGCCACGC AAAAGGCCAT GAGCGAAGTG
ACCGGGCCAA TCATCGCCAC CGCGCTGGTG TTGTGCGCGG TGTTCGTGCC GGCCGCGTTC
ATCTCTGGCC TTACCGGGCA GTTCTACAAG CAGTTCGCCT TGACTATCGC CATTTCCACT
GTGATCTCGG CGTTCAACTC GCTGACCTTG TCGCCGGCCC TGGCTGCCGT GCTGCTGAAG
GACCACCATG CACCCAAGGA CCGTTTCTCG CGGTTCCTCG ACAAACTGCT GGGCAGTTGG
CTGTTCGCCC CGTTCAACCG TTTCTTCGAC CGTGCCAGCC ACCGCTACGT CGGCGGCGTG
CGCCGAGTCA TTCGCTCCAG CGGCATCGCC CTGTTCGTGT ATGCCGGCCT GATGGGCCTG
ACCTACCTCG GCTTCTCGTC CACCCCGACC GGTTTCGTGC CGGCCCAGGA CAAGCAGTAC
CTGGTAGCCT TCGCCCAACT GCCGGACGCC GCCAGCCTCG ACCGTACCGA GGCGGTGATC
AAGCGCATGA GCGAAATCGC CCTGAAACAA CCTGGCGTTG CCGACTCGGT GGCGTTCCCA
GGCTTGTCGA TCAACGGTTT CACCAACAGC CCGAACAGCG GCATCGTGTT CACCCCGCTC
AAGCCGTTTG ATGAGCGCAA GGACCCGAGC CAGTCGGCGG CAGCCATTGC AGCCGCGCTG
AATGCCCAAT TCGCCGACAT CCAGGACGCT TACATCGCCA TCTTCCCACC GCCGCCGGTA
CAGGGCCTGG GCACGATTGG CGGCTTCCGC CTGCAAATCG AAGACCGTGG CAACCTGGGT
TACGAAGCGC TGTACAAGGA AACCCAGAAC ATCATCGCCA AGAGCCACAA CGTACCCGAG
CTGGCAGGCC TGTTCACCAG CTACCAGGTC AACGTGCCGC AGGTCGATGC CGCCATCGAC
CGGGAAAAGG CCAAGACCCA CGGTGTGGCG ATCACAGACA TCTTCGACAC CCTGCAGGTT
TACCTGGGCT CGCTGTACAC CAACGACTTC AACCGTTTTG GCCGCACCTA TCAGGTCAAC
GTCCAGGCCG AGCAACAGTT CCGCCTCGAT GCCGAGCAGA TCGGCCAGTT GAAGGTGCGC
AACAACCTGG GCGAGATGAT CCCGCTGGCG ACCTTCCTCA AGGTCAGCGA TACCTCCGGG
CCAGACCGCG TCATGCACTA CAACGGTTTC ATCACAGCCG AAATCAACGG GGCCGCAGCG
CCGGGCTACA GCTCTGGCCA GGCCGAAGCC GCCATCGAGA AGCTGCTGAA AGAGGAACTG
CCCAACGGCA TGACCTTCGA GTGGACCGAC CTGACTTACC AGCAGATTCT CTCGGGCAAT
ACTGCACTGC TGGTGTTCCC GCTGTGCGTA CTGCTGGCGT TCCTGGTACT GGCTGCCCAG
TACGAAAGCT GGAGCTTGCC GCTGGCGGTG ATCCTGATCG TACCGATGAC CCTGCTGTCG
GCCATCACCG GTGTGATCGT GTCGGGTGGC GACAACAACA TCTTCACCCA GATCGGCCTG
ATCGTACTGG TGGGCCTGGC GTGCAAGAAC GCGATTCTGA TCGTCGAGTT CGCCAAGGAT
GAACAGGCCA AGGGCCTCGA CCCGCTGGCT GCGGTGCTGG AAGCCTGCCG CCTGCGCCTG
CGGCCGATCC TCATGACGTC GATCGCCTTC ATCATGGGTG TGGTGCCGCT GGTGTTCAGC
TCCGGTGCAG GTTCCGAAAT GCGCCATGCC ATGGGTGTGG CGGTGTTCTC GGGGATGATC
GGGGTGACCG TGTTCGGCCT GTTCCTGACC CCGGTGTTCT TCTTCCTGAT CCGCCGTTTC
GTCGAGCGTC GCCAGGCCCG CAAGGCCGAA CGCGTTCAAG TGCTGGAGAA CCATGCATGA
 
Protein sequence
MNFSKFFITR PIFAAVLSLV LLIAGSISLF QLPISEYPEV VPPTVVVRAN FPGANPKVIG 
ETVAAPLEQA ITGVENMLYM SSQSTADGKL TLTITFALGT DLDNAQVQVQ NRVTRTQPKL
PEEVTRIGIT VDKASPDLTM VVHLTSPDNR YDMLYLSNYA ILNIKDELAR LGGVGDVQLF
GMGDYSLRVW LDPNKTASRN LTASDVVAAI REQNRQVAAG QLGAPPAPGS TSFQLSINTQ
GRLVNEEEFE NIIIRAGADG EITRLKDIAR VELGSSQYAL RSLLNNQPAV AIPIFQRPGS
NAIEISDEVR AKMAELKKDF PEGMDYSIVY DPTIFVRGSI EAVVHTLFEA LVLVVLVVIL
FLQTWRASII PLLAVPVSLI GTFAVMHLFG FSLNALSLFG LVLAIGIVVD DAIVVVENVE
RNIGLGLKPL EATQKAMSEV TGPIIATALV LCAVFVPAAF ISGLTGQFYK QFALTIAIST
VISAFNSLTL SPALAAVLLK DHHAPKDRFS RFLDKLLGSW LFAPFNRFFD RASHRYVGGV
RRVIRSSGIA LFVYAGLMGL TYLGFSSTPT GFVPAQDKQY LVAFAQLPDA ASLDRTEAVI
KRMSEIALKQ PGVADSVAFP GLSINGFTNS PNSGIVFTPL KPFDERKDPS QSAAAIAAAL
NAQFADIQDA YIAIFPPPPV QGLGTIGGFR LQIEDRGNLG YEALYKETQN IIAKSHNVPE
LAGLFTSYQV NVPQVDAAID REKAKTHGVA ITDIFDTLQV YLGSLYTNDF NRFGRTYQVN
VQAEQQFRLD AEQIGQLKVR NNLGEMIPLA TFLKVSDTSG PDRVMHYNGF ITAEINGAAA
PGYSSGQAEA AIEKLLKEEL PNGMTFEWTD LTYQQILSGN TALLVFPLCV LLAFLVLAAQ
YESWSLPLAV ILIVPMTLLS AITGVIVSGG DNNIFTQIGL IVLVGLACKN AILIVEFAKD
EQAKGLDPLA AVLEACRLRL RPILMTSIAF IMGVVPLVFS SGAGSEMRHA MGVAVFSGMI
GVTVFGLFLT PVFFFLIRRF VERRQARKAE RVQVLENHA