Gene PputGB1_2509 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_2509 
Symbol 
ID5870298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp2816459 
End bp2817874 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content68% 
IMG OID641547632 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_001668744 
Protein GI167033513 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.293505 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTGC TCAAACCCCT GACCCCAAGC CTGCTGGCAC TGGCCCTGGC GGCCTGTGCG 
GTAGGCCCGG ACTACCAGGC CCCCGCTACC GAGCCTGCGC AGCTGGCCAG CGATGTGCAG
GCCAAGGCCT ACGACCGAAG CCGCTTCGAG AGCCTGTGGT GGAAGCAGTT CGACGACCCG
GTGCTGAACC AGCTGGTGCA GGCTTCGCTG GACGGCAACC GTGATTTGCG CGTGGCCTTC
GCCCGCCTGA AGTCGGCCCG CTCGATCCGT GAAGACGCTG AGAACGATCA GTTCCCGGTG
GTCACCAGCC GCGCCAGCAG CGACATCGGC AAGGGCCAGA TCCCAGGCCA GACCACCCAG
CGGGTGAACA GCGAGCGCTA CGACCTGGGC CTGGACATGG CCTGGGAGCT TGACCTGTTC
GGCCGCATCC AGCGCCAGAT CGAAGCCAGC GAAGCCCAGG AAGCGGTAGC CGCCGCCGAC
CTGCAGCAGT TGCAAGTCAG CCTGATCGCC GAACTGGTCG ATGCCTACGG GCAATTGCGC
GGTGCCCAGT TACGCGAAAA AATCGCCCTG GCCAACCTCA AGACCCAGCA GGAATCGCGC
ACTATCACCG AAACCCTGCG CGATGCCGGC GTGGGCAACG ACCTTGACGT GGTGCGTGCC
GATGCGCGCC TGGCCGGGGT CGAAGCCACC GTGCCGCAAC TGCAGGCCGA ACAGGCACGG
GCGCGGCACC GCATCGCCAC CCTGCTCGGC CAACGCCCTG ACGCGCTCAG CGTAGACCTG
TCGCCCAAAG CCCTGCCGGC CATCGCCAAG GCGCTGCCGG TGGGTGACCC GGGTGAGTTG
CTGCGCCGCC GCCCGGACAT CCGCAGCGCC GAACGCCAGC TGGCGGCCGC CACCGCCAAC
GTGGGCGTGG CCACCGCCGA CCTGTTCCCG CGGGTCAGCC TCAGCGGCTT CCTCGGCTTT
ACCGCCGCGC GCGGCTCGCA GATCGGCTCC TCGGCGGCCA ACGCCTGGGC GCTGGGCCCG
AGCATTACCT GGGCGGCCTT CGACCTGGGC AGCGTGCGGG CCCGCCTGCG CGGCGCCAAG
GCCGATGCCG AAGGGGCATT GGCCAACTAC GAGCAGCAAG TACTGCTGGC CCTGGAAGAG
TCGGCCAACG CCTTCAGCGA TTACGACAAA ACCCAGCAAC GGCTGTTGTC GCTGATGCGT
CAGAGCGACG CCAGCCGCAA GGCGGCGGAG CTGGCCTCGA TTCGCTATCG CGAGGGTACG
GTGGATTACC TGGTACTGCT CGATGCCGAG CGCGAACGGC TGAGCGCTGA AGATGCACAG
GCCCAGGGTG AGGTTGAGCT CTACCGCGGC ATCGTCTCGA TCTACAAGGC CCTGGGCGGT
GGCTGGCAAC CGGAGACCGT TGCCAGCGCC CGCTGA
 
Protein sequence
MNLLKPLTPS LLALALAACA VGPDYQAPAT EPAQLASDVQ AKAYDRSRFE SLWWKQFDDP 
VLNQLVQASL DGNRDLRVAF ARLKSARSIR EDAENDQFPV VTSRASSDIG KGQIPGQTTQ
RVNSERYDLG LDMAWELDLF GRIQRQIEAS EAQEAVAAAD LQQLQVSLIA ELVDAYGQLR
GAQLREKIAL ANLKTQQESR TITETLRDAG VGNDLDVVRA DARLAGVEAT VPQLQAEQAR
ARHRIATLLG QRPDALSVDL SPKALPAIAK ALPVGDPGEL LRRRPDIRSA ERQLAAATAN
VGVATADLFP RVSLSGFLGF TAARGSQIGS SAANAWALGP SITWAAFDLG SVRARLRGAK
ADAEGALANY EQQVLLALEE SANAFSDYDK TQQRLLSLMR QSDASRKAAE LASIRYREGT
VDYLVLLDAE RERLSAEDAQ AQGEVELYRG IVSIYKALGG GWQPETVASA R