| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2481 |
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| Symbol | |
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| ID | 5870270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 2775630 |
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| End bp | 2778758 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641547604 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001668716 |
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| Protein GI | 167033485 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.107947 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCAAT TCTTCATCGA TCGCCCGGTA TTCGCCTGGG TGGTCGCACT GTTCATCCTG
CTGGCCGGTG CGCTGGCCAT CCCGCAACTG CCGGTGGCCC AGTACCCCAA CGTGGCACCG
CCACAGGTGG AGATCTACGC CGTGTACCCA GGCGCCTCGG CGGCGACCAT GGACGAAAGC
GTGGTCAGCC TGATCGAGCA GGAACTCAAC GGCGCCGACA ACCTGCTGTA CTTCGAGTCG
CAGAGCAGCC TGGGCAGCGC CACCATCACC GCCACCTTCG CCCCAGGCAC CAACCCGGAA
CTGGCCCAGG TCGACGTGCA AAACCGCCTG AAGGTGGTCG AATCGCGCCT GCCACGCCCA
GTCACCCAGC AGGGCCTGCA AGTGGAGAAG GTGTCTACGG GCTTCCTGCT GTTGGCCACC
CTCACCTCCG AAGACGGCAA GCTCGACGAA ACCGCGCTGT CGGACATCCT CGCCCGTAAC
GTGATGGACG AAATCCGCCG CCTCAAAGGC GTCGGCAAGG CTCAGTTGTA CGGCTCCGAG
CGCGCCATGC GCATCTGGAT CGACCCACGC AAGCTGATCG GCTTCAACCT CACGCCCAAC
GACGTGGCCG AGGCCATCGC GGCGCAGAAC GCCCAGGTCG CCCCTGGCAG CATTGGCGAC
CTGCCCAGCC GCGACACCCA GGAAATCACC GCCAACGTAG TGGTCAAGGG CCAGCTGAGC
ACGCCTGAAG AATTCGCCGC GATTGTTCTG CGCGCCAACC TGGATGGCTC CACGGTGACC
ATCGGGGATG TCGCCCGGGT CGAGATCGGC GCCCAGGAAT ACCAGTACGG CACGCGCCTG
AACGGCAAGC CGGCCACCGC CTTCAGCGTG CAGCTGTCGC CGGGGGCCAA CGCCATGGAA
ACCGCCACCC TGGTACGGGC GAAGATGCAG GACCTGGCCC GCTACTTCCC GGAAGGCGTC
AAGTACGACA TCCCCTACGA CACCTCGCCG TTCGTCAAAG TGTCGATCGA GCAGGTCATC
AACACCCTGT TCGAAGCCAT GCTGCTGGTG TTCGCAGTGA TGTTCCTGTT CCTGCAGAAC
CTGCGCTACA CGCTGATCCC GACCCTGGTG GTGCCCGTGG CATTGATGGG CACCTTCGCC
GTGATGCTGG CCATGGGCTT CTCGGTCAAT GTGCTGACCC TGTTCGGCAT GGTGCTGGCC
ATCGGCATCC TGGTCGACGA TGCCATCGTG GTGGTGGAAA ACGTCGAGCG CATCATGGCC
GAAGAAGGCC TGCCGCCCAA AGAGGCCACG CGCAAAGCCA TGGGCCAGAT CAGCGGGGCG
ATCATCGGTA TCACCCTGGT ACTGGTGGCG GTGTTCCTGC CCATGGCCTT CATGCAAGGC
TCGGTGGGGG TGATCTACCA GCAGTTCTCG CTGTCGATGG CGGTATCGAT CCTGTTCTCG
GCGTTTCTTG CCCTCAGCCT GACCCCGGCA TTGTGCGCCA CCCTGCTCAA GCCCGTGGCC
AAAGGTGAGC ACCACGCACG CAAAGGCTTC TTCGGCTGGT TCAACCGCCG CTTCGAAAGC
ATGAGCAACG GCTACCAACG CTGGGTGGTA CAGGCGCTCA AGCGCAGTGG CCGCTACCTG
GTGGTGTACG CTGTGCTGCT GGCGGTGCTG GGCTACGGGT TCAGCCAGTT GCCCACGGCG
TTTCTGCCCA CCGAAGACCA GGGTTACACC ATTACCGACA TCCAACTGCC GCCCGGTGCC
AGCCGCATGC GCACCGAACA GGTAGCCGCG CAGATCGAGG CGCATAACGC CGAGGAACCG
GGGGTGGGCA ACACCACCTT GATTCTCGGT TTCAGCTTCT CCGGCAGCGG GCAGAACGCG
GCGCTGGCCT TCACCACGCT CAAGGACTGG TCCGAGCGCG GCACCGATGA CAGCGCCCAG
TCGATCGCCG ACCGCGCGAC CATGGCCTTC AGCCAGCTCA AGGACGCCAT CGCCTTCTCG
GTACTGCCAC CCCCAATCGA CGGCCTGGGC GAATCGACCG GCTTCGAGTT CCGCCTGCAG
GACCGTGGCG GCATGGGCCA CGCCGAACTG ATGGCGGCCC GTGACCAGTT GCTGGCAAGC
GCCGGTAAAA GCAAGGTATT GACCAACGTG CGTGAAGCCT CGCTGGCGGA AAGCCCGCAA
GTGCAGCTGG AAATCGACCG CCGCCAGGCC AATGCCCTGG GCGTATCGTT TGCCGATATC
GGCACGGTGC TGGACGTGGC TGTGGGCTCC AGCTACGTCA ACGACTTCCC CAACCAGGGC
CGCATGCAGC GGGTGGTGGT GCAGGCCGAA GGCAACCAGC GCAGCCAGGT CGAGGATTTG
CTGAAAATCC ACGTACGCAA CACTAGCGGC AAGATGGTGC CACTGGGCGC GTTCGTCCAG
GCCAAATGGG TCAGCGGCCC GGTGCAGCTG ACCCGCTACA ACGGCTACCC GGCGGTGTCG
ATTTCCGGCG AACCGGCGGC CGGCTACAGC TCCGGTGAGG CCATGGCCGA AGTCGAGCGC
CTGGTGGCGC AGCTTCCAGC CGGTGCCGGC CTGGAATGGA CCGGCCTGTC CCTGCAGGAA
CGCCTTTCCG GCAGCCAGGC ACCGATGCTG ATGGCGCTGT CGTTGCTGGT GGTGTTCCTG
TGCCTGGCGG CGCTGTACGA AAGCTGGTCG ATCCCGACTG CGGTACTGCT GGTGGTACCA
CTCGGCGTGC TGGGTGCAGT GCTGGCCGTG ACCCTGCGCG GCATGCCCAA CGATGTATTC
TTCAAAGTTG GCCTGATTAC TCTGATCGGC CTGTCGGCGA AGAATGCCAT CCTGATCATC
GAGTTCGCCA AGCACCTGGT CGATCAGGGC GTGGACGCCG TCGACGCTGC CGTACAAGCC
GCCCGCCTGC GCCTGCGGCC GATCGTGATG ACCTCGCTGG CGTTCATCCT CGGCGTGGTG
CCACTGGCCA TCGCCAGCGG CGCAAGCTCC GCCAGCCAGC AAGCGATCGG CACCGGGGTG
ATTGGCGGCA TGCTCAGCGC CACCCTGGCG GTGGTGTTCG TGCCGGTGTT CTTCGTGGTG
GTGATGCGCC TGTCCGGGCG GCGCCAGACG CAAAACGCTG CCACGCATCC GGTGGCCGGT
GAAAGCTGA
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| Protein sequence | MPQFFIDRPV FAWVVALFIL LAGALAIPQL PVAQYPNVAP PQVEIYAVYP GASAATMDES
VVSLIEQELN GADNLLYFES QSSLGSATIT ATFAPGTNPE LAQVDVQNRL KVVESRLPRP
VTQQGLQVEK VSTGFLLLAT LTSEDGKLDE TALSDILARN VMDEIRRLKG VGKAQLYGSE
RAMRIWIDPR KLIGFNLTPN DVAEAIAAQN AQVAPGSIGD LPSRDTQEIT ANVVVKGQLS
TPEEFAAIVL RANLDGSTVT IGDVARVEIG AQEYQYGTRL NGKPATAFSV QLSPGANAME
TATLVRAKMQ DLARYFPEGV KYDIPYDTSP FVKVSIEQVI NTLFEAMLLV FAVMFLFLQN
LRYTLIPTLV VPVALMGTFA VMLAMGFSVN VLTLFGMVLA IGILVDDAIV VVENVERIMA
EEGLPPKEAT RKAMGQISGA IIGITLVLVA VFLPMAFMQG SVGVIYQQFS LSMAVSILFS
AFLALSLTPA LCATLLKPVA KGEHHARKGF FGWFNRRFES MSNGYQRWVV QALKRSGRYL
VVYAVLLAVL GYGFSQLPTA FLPTEDQGYT ITDIQLPPGA SRMRTEQVAA QIEAHNAEEP
GVGNTTLILG FSFSGSGQNA ALAFTTLKDW SERGTDDSAQ SIADRATMAF SQLKDAIAFS
VLPPPIDGLG ESTGFEFRLQ DRGGMGHAEL MAARDQLLAS AGKSKVLTNV REASLAESPQ
VQLEIDRRQA NALGVSFADI GTVLDVAVGS SYVNDFPNQG RMQRVVVQAE GNQRSQVEDL
LKIHVRNTSG KMVPLGAFVQ AKWVSGPVQL TRYNGYPAVS ISGEPAAGYS SGEAMAEVER
LVAQLPAGAG LEWTGLSLQE RLSGSQAPML MALSLLVVFL CLAALYESWS IPTAVLLVVP
LGVLGAVLAV TLRGMPNDVF FKVGLITLIG LSAKNAILII EFAKHLVDQG VDAVDAAVQA
ARLRLRPIVM TSLAFILGVV PLAIASGASS ASQQAIGTGV IGGMLSATLA VVFVPVFFVV
VMRLSGRRQT QNAATHPVAG ES
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