| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2428 |
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| Symbol | |
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| ID | 5870217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2715841 |
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| End bp | 2718972 |
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| Gene Length | 3132 bp |
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| Protein Length | 1043 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641547551 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001668663 |
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| Protein GI | 167033432 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.164281 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAGT TCTTCATCAA ACGGCCGAAC TTCGCCTGGG TCGTGGCGCT GTTCATTTCC
CTGGCGGGGT TGCTGGTCAT ACCTACGCTG CCGGTGGCCC AGTACCCTAA CGTAGCGCCA
CCACAAATCA CCATCACCGC TACCTACCCA GGGGCTTCGG CCAAGGTGCT GGTGGACTCG
GTTACCAGCA TCATCGAAGA GTCGCTCAAC GGCGCCAAGA ACCTGCTGTA TTTCGAGTCG
ACCAACAACT CCAACGGCAT GGCCGAAGTG GTGGTCACCT TCGAGCCGGG TACCGACCCG
GAACTGGCCC AGGTGGATGT GCAGAACCGC CTGAAAAAGG CCGAAGCACG CATGCCGCAG
GCGGTGATCA CCCAAGGCAT CCAGGTCGAG CAGACCAGTG CCGGCTTCCT GCTGATCTAC
GCCCTCAGCT ACAAGGAGGG CGCAGGCCAG GCCGATACCA CGGCGCTGGG CGACTACGCC
GCGCGCAACA TCAACAATGA GCTGCGCCGG GTCCCGGGCG TGGGCAAGTT GCAGTTCTTC
TCGTCGGAAG CCGCCATGCG CGTGTGGGTC GACCCACAGA AACTGGTGGG CTATGGGCTG
TCGATCGATG ACGTGAGCAA TGCCATCCGT GGGCAGAACG TGCAGGTGCC GGCCGGCAGC
TTCGGCAGCG CGCCGGGCAG CAGCCAGCAG GAGCTGACTG CCACCCTGGC GGTGCAAGGC
ACCCTGGACG ACCCTCAGGC GTTCGGCCGA GTGGTACTGC GCGCCAACCC GGACGGTTCG
CTGGTGCGCC TGGCCGATGT CGCCCGCCTG GAAGTGGGCA TGGAAAGCTA CAACTTTTCT
TCGCGCCTGA ATGGCAAACC TGCGGTGGCC GGTGCGGTGC AGCTGGCGCC GGGCGCCAAT
GCGCTGAAAA CTGCCGATCT GGTCAAGGAA CGCCTGGCCG AGCTGAGCGC GTTCTTCCCC
GAGGGCGTCG AGTACTCGGT GCCCTATGAC ACCTCGCGTT TTGTCGACGT GGCCATCGAA
AAGGTCATTC ACACCCTGCT CGAAGCCATG GTGCTGGTAT TCCTGGTGAT GTTCCTGTTC
CTGCAGAACA TCCGCTACAC GCTGATCCCG TCGATCGTGG TACCGGTGTG CCTGCTGGGC
ACGTTGATGG TGATGAAGCT GCTGGGCTTC TCGGTGAACA TGATGACCAT GTTCGGCATG
GTGCTGGCGA TCGGCATCCT GGTCGACGAC GCCATCGTGG TGGTGGAAAA CGTCGAGCGG
ATCATGGCCG AGGAAGGGCT GTCGCCTGTC GACGCCACCA TCAAGGCAAT GGGCCAGGTG
TCCGGCGCGA TCATCGGCAT CACCCTGGTA CTGTCGGCCG TGTTCATGCC ACTGGCGTTC
ATGTCGGGTT CGGTGGGGGT GATCTACCAG CAGTTTTCGC TGTCGCTGGC GGTGTCGATC
CTGTTCTCGG GCTTCCTCGC GCTTACCTTC ACCCCGGCCC TGTGCGCCAC GATGCTCAAG
CCGGTGGCCC CTGGGCACCA TGAAAAGCGC GGCTTCTTCG GCGCTTTCAA CCGTGGCTTT
GCGCGGCTGA CCGAGCGCTA CTCGGTGATG AACAACGCCC TGGTGCGCCG TGCCGGCCGC
TACATGCTGC TGTATGCCGG TATTCTGGCG ATGCTCGGCT ATTTCTACCT GCGCCTGCCG
GAATCCTTCG TACCGGTGGA AGACCAGGGC TATGCGATCG TTGACGTGCA GCTGCCGCCG
GGCGCCAGCC GCGTGCGTAC CGACGCCACC GGGCAGGCCC TGGAGCAGTT CCTGATGTCC
CGCGAGGCGC TGGCCTCGGC ATTCCTGGTC AGCGGCTTCA GCTTCTCGGG CATGGGCGAG
AACGCCGCGT TGGCATTCCC TACCTACAAA GACTGGTCGG TACGTAGCGC CGAGCAATCG
GTGGATGCCG AAACCCAGGC GATCAATGCG CAATTTGCCA GCCATGGCGA TGGCACGATC
ATGGCGGTCA ACCCGCCGCC GATCGATGGC CTGGGCAACG CCGGTGGCTT CGCCCTGCGC
CTGCTCGACC GTGGCGGCCT GGGCCGTGAG GCCTTGCTGG CGGCACGCGA CAAGATCCTG
GGCGAGGCCA ACGGCAACCC AGTCATCCTT TACGCGATGA TGGAAGGGTT GGCAGAAGCG
CCGCAGTTGC GGGTCGACAT CGATCGGGAA AAGGCCCGTG CCCTTGGCGT GCCCTTCGAA
ACCATCAACA GCACCCTGGC CACCGCCTTT GGCTCGGCAG TGATCAACGA CTTCACCAAC
GCTGGCCGGC AACAACGGGT GGTGGTGCAG GCAGAGCAGG GCGAGCGCAT GACCCCGGAA
AGCGTGCTGC GCCTGTACGC GCCGAACGTC GATGGCCAGC AGGTGCCGTT CAGCAGCTTC
GTCACCACCC GTTGGGAAGA AGGGCCGGTA CAGATCGTGC GTTACAACGG CTACCCGTCG
ATCCGCATTT CCGGTGATGC CACGCCGGGC TACAGCACCG GCCAGGCGAT GGCCGAAATG
GAGCGCCTGG TCAGTGAACT GCCGCCGGGG ATCGGCTACG CCTGGACGGG GCTTTCTTAC
CAGGAGAAGG TCTCCAGCGG CCAGGCCAGC AGCCTGTTCG CCCTGGCCAT CCTGGTGGTG
TTCCTGCTGC TGGTGGCGTT GTACGAAAGC TGGGCGATCC CGCTGACGGT GATGCTCATC
GTGCCGATCG GTGCGTTGGG CGCGGTGCTG GCGGTGATGG TCACCGGCAT GCCCAACGAT
GTGTACTTCA AGGTTGGCCT GATCACCATC ATCGGCTTGG CGGCGAAGAA CGCCATCCTC
ATCGTCGAGT TCGCCAAGGA GCTGTGGGAG AAAGGCTATA GCCTGCGTGA CGCTGCGATC
GAAGCCGCGC GCCTGCGCTT TCGGCCGATC GTGATGACTT CGATGGCGTT CATCCTCGGC
GTGGTACCCC TGGCGATCGC CAGCGGTGCC GGTGCTGCCA GCCAGCGGGC GATTGGTACC
GGGGTGATCG GCGGCATGCT CAGCGCCACG TTGCTGGGCG TGCTGTTCGT GCCGATCTGT
TTTGTCTGGG TGCTGTCGCT GCTCAAGCGC AAGCCAGCGC CGCAGGCCCA ACCTGCCGAG
GTGCTGGAGT GA
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| Protein sequence | MSKFFIKRPN FAWVVALFIS LAGLLVIPTL PVAQYPNVAP PQITITATYP GASAKVLVDS
VTSIIEESLN GAKNLLYFES TNNSNGMAEV VVTFEPGTDP ELAQVDVQNR LKKAEARMPQ
AVITQGIQVE QTSAGFLLIY ALSYKEGAGQ ADTTALGDYA ARNINNELRR VPGVGKLQFF
SSEAAMRVWV DPQKLVGYGL SIDDVSNAIR GQNVQVPAGS FGSAPGSSQQ ELTATLAVQG
TLDDPQAFGR VVLRANPDGS LVRLADVARL EVGMESYNFS SRLNGKPAVA GAVQLAPGAN
ALKTADLVKE RLAELSAFFP EGVEYSVPYD TSRFVDVAIE KVIHTLLEAM VLVFLVMFLF
LQNIRYTLIP SIVVPVCLLG TLMVMKLLGF SVNMMTMFGM VLAIGILVDD AIVVVENVER
IMAEEGLSPV DATIKAMGQV SGAIIGITLV LSAVFMPLAF MSGSVGVIYQ QFSLSLAVSI
LFSGFLALTF TPALCATMLK PVAPGHHEKR GFFGAFNRGF ARLTERYSVM NNALVRRAGR
YMLLYAGILA MLGYFYLRLP ESFVPVEDQG YAIVDVQLPP GASRVRTDAT GQALEQFLMS
REALASAFLV SGFSFSGMGE NAALAFPTYK DWSVRSAEQS VDAETQAINA QFASHGDGTI
MAVNPPPIDG LGNAGGFALR LLDRGGLGRE ALLAARDKIL GEANGNPVIL YAMMEGLAEA
PQLRVDIDRE KARALGVPFE TINSTLATAF GSAVINDFTN AGRQQRVVVQ AEQGERMTPE
SVLRLYAPNV DGQQVPFSSF VTTRWEEGPV QIVRYNGYPS IRISGDATPG YSTGQAMAEM
ERLVSELPPG IGYAWTGLSY QEKVSSGQAS SLFALAILVV FLLLVALYES WAIPLTVMLI
VPIGALGAVL AVMVTGMPND VYFKVGLITI IGLAAKNAIL IVEFAKELWE KGYSLRDAAI
EAARLRFRPI VMTSMAFILG VVPLAIASGA GAASQRAIGT GVIGGMLSAT LLGVLFVPIC
FVWVLSLLKR KPAPQAQPAE VLE
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