| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2406 |
|---|
| Symbol | |
|---|
| ID | 5870195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2689942 |
|---|
| End bp | 2690814 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641547529 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001668641 |
|---|
| Protein GI | 167033410 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.268881 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCG GCACCACCAC GCTTGCCCAC CGCAAGGCCA GGGCCTGGCT TTGGCCTGCA
CTGTTCAGCC TGGTGGCTTT CGCTGCCAAC TCGGTGTTTT GCCGGCTGGC GCTGAAAGAC
GGGGCCATCG ACCCGGCATC CTTCACCGTG GTGCGCCTGA CCAGTGGTGC GTTGTTTCTG
TTGTTGCTGA TCCGCCTGCG CAGGCCGGCG CAGGCCATGG GTGGCAGTTG GCGGGGCGGC
CTGGCCCTGT TCCTGTACGC GTTCCTGTTT TCTGCGGCGT ATCTGCAATT GGGGGCAGGC
GCGGGCGCAT TGTTGCTGTT CGGTGCAGTG CAGATCACCA TGTTCGGCTT TGCCTGGTAC
AAGGGTGAAC ACATCACGGT GCGCATGCTG CTGGGCATGC TGATCGCCTT TGCCGGCCTG
CTGGTGCTTC TTTTGCCCGG TGCCTCGGCG CCGCCGTTGG CCAGTGCCTT GCTGATGGCC
TTGTCCGGCG TGGCCTGGGG CGTGTATACG CTGCTGGGCA AAGGCTCGCC CAGGCCGCTG
GCCGACACCG CCGGCAATTT TTCTCGCAGC CTGCCTTGCC TGGTGCTGCT GCTACCGATG
CTGTTGCTGA GCGCCGGCCC GCACCTTACG CCACTTGGCT TGTTGTATGC CCTGGGCTCC
GGTGTGCTGG CTTCTGGCGC CGGCTACGCC GTTTGGTATG GCGTGGTCAG GCAGGTCAGC
GCGCAACAGG CGGCGACCCT GCAGCTTAGC GTGCCGGTGA TTGCCGCACT GGGTGGGGTC
GCCCTGATCG GTGAGCCGTT GTCGTTGCGC TTGCTGATTG CCTGCGTGGT GGTTTTGGGC
GGTATTGCCC TGGCGCTGGC ACCGCGTCGT TAA
|
|---|
| Protein sequence | MSTGTTTLAH RKARAWLWPA LFSLVAFAAN SVFCRLALKD GAIDPASFTV VRLTSGALFL
LLLIRLRRPA QAMGGSWRGG LALFLYAFLF SAAYLQLGAG AGALLLFGAV QITMFGFAWY
KGEHITVRML LGMLIAFAGL LVLLLPGASA PPLASALLMA LSGVAWGVYT LLGKGSPRPL
ADTAGNFSRS LPCLVLLLPM LLLSAGPHLT PLGLLYALGS GVLASGAGYA VWYGVVRQVS
AQQAATLQLS VPVIAALGGV ALIGEPLSLR LLIACVVVLG GIALALAPRR
|
|---|
| |