| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2373 |
|---|
| Symbol | |
|---|
| ID | 5870162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2656167 |
|---|
| End bp | 2657354 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641547497 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001668609 |
|---|
| Protein GI | 167033378 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACTC CCGCAGACAC CCCGACTCCC TCCGCCGAGC CCTCGCGCAA GCGCAAGGCC
TGGCTGCTTG GCCTGCTGTT GCTGCTGATA CTTGGTGGTA TCGGCACGTG GGCCTGGTAC
AGCCTGGTCG GCCGCTGGCA CGAAAGCACC GACGATGCCT ACGTCAATGG CAACGTCGTG
GAAATCACCC CACTGGTCAC CGGCACTGTG ACCAGCATCG GAGCCGATGA CGGCGACCTG
GTCCATGCCG GCCAGGTGTT GCTGCAATTC GACCCAGCCG ACAGCGAGGT GGCCTTGCAG
TCCGCCGAAG CCAAGCTGGC GCGCAGTGTG CGCCAGGTCC GCGGGCTGTA CAGCAACGTC
GACTCGCTCA AGGCCCAGCT GGAAACGCGC CAGGCCGAAC TGCGCAAGGC GCAGCAGGAC
TTCAACCGGC GCAAGGTGCT GGCCGACAGC GGTGCGATTG CCGCAGAAGA GCTGTCCCAT
GCCCGCGACG ACTTGAGCGT GGCCCAGGCC GCCGTCAACA GTGCACGCCA GCAACTCAGC
ACCAGCAGCG CGCTGGTCGA CGACACCGTG GTGTCCTCGC ACCCCGAGGT GATGGCTGCC
GCAGCCGACT TGCGCCAGGC CTACCTCGAC CACGCCCGTA CCACCCTGGT CGCGCCGGTC
ACCGGCTATG TCGCCAAGCG CACCGTGCAG CTGGGCCAGC GCCTGCAGCC GGGCACCGCG
ACCATGGCGG TAATCCCGCT GGACCAGGTG TGGATCGACG CCAACTTCAA GGAAACCCAA
CTGCGTGACA TGCGCATTGG CCAGCCCGTG GAAATCAGCG CTGACCTGTA CGGTAGCGAG
GTCAAGTACA GCGGCACGGT CGACAGCCTT GGCGCGGGTA CCGGCAGTGC CTTTGCCTTG
CTGCCGGCGC AGAACGCCAC CGGTAACTGG ATCAAGATCG TCCAGCGCGT ACCCGTGCGC
ATCCACCTCA GCCCCGACCA GCTCAAGGAC CACCCGCTGC GTATCGGCCT GTCCACCGTG
GTGGAAGTCG ACCTGCACGA CCAGAGCGGC CCGACCCTGG CCCAGCAGCC ACCGCAGCAG
GCCAGTTACA CCACCCAGGT GTATGACCGC CAGCTGGTCG AAGCCGATAA CCTGATCGCT
CAGCTGATTC ACGAAAACAG CGCTCCCGGC AAGACGGCGC AGCGATGA
|
|---|
| Protein sequence | MATPADTPTP SAEPSRKRKA WLLGLLLLLI LGGIGTWAWY SLVGRWHEST DDAYVNGNVV
EITPLVTGTV TSIGADDGDL VHAGQVLLQF DPADSEVALQ SAEAKLARSV RQVRGLYSNV
DSLKAQLETR QAELRKAQQD FNRRKVLADS GAIAAEELSH ARDDLSVAQA AVNSARQQLS
TSSALVDDTV VSSHPEVMAA AADLRQAYLD HARTTLVAPV TGYVAKRTVQ LGQRLQPGTA
TMAVIPLDQV WIDANFKETQ LRDMRIGQPV EISADLYGSE VKYSGTVDSL GAGTGSAFAL
LPAQNATGNW IKIVQRVPVR IHLSPDQLKD HPLRIGLSTV VEVDLHDQSG PTLAQQPPQQ
ASYTTQVYDR QLVEADNLIA QLIHENSAPG KTAQR
|
|---|
| |