| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2345 |
|---|
| Symbol | |
|---|
| ID | 5870134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2623365 |
|---|
| End bp | 2624105 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641547469 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001668581 |
|---|
| Protein GI | 167033350 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGT ACCTGCAAGG CCAGACCGCA ATCGTCACCG GAGGGATGCG TGGCATCGGC
CTGGCGATTG CCCAGCGCCT GCATGCCGCC GGCGCCCAGG TTGTGATCTG GGACCTCGCC
GTGGAGGGTT GGAGCAACGC GGAAAACGGC TTTGAGCCCG TGCTGCGCCA GGCGGTGGAT
GTATCGTCGC TGGCCTCGGT AGAGACAGCC TTCGCCGAGA CGCTGAGGCG TATAGGGCAG
GTGCAGATTC TGGTCAACAA CGCTGGCATC AATGGCCCTG TGGTGTCGTC GTGGGAGTAC
CCGCCAGAGG CCTGGGACAA GGTCATCGCC ATTGACCTGA ACGGCGTGTT CTATTGCTGC
CGTACCGCCA TCCCGCATAT GCGTGACAAC GGCTACGGGC GCATCGTCAA TATCGCCTCC
ATGGCCGGCA AGGATGGCGT GCAGTACATC TCGGCCTATT CGGCAGCCAA GGCTGGGGTC
ATCGCCTTTA CCAAGGCAGC GGCCAAGGAG CTGGCGCAGG ACGGCGTGCT GCTCAACTGC
GTGGCACCGG CCATGGTCGA GACCCCGCTG ATGGCCGAGA TGACGGCCGA GCACATTGCC
GCGAGCAAGG CCAAGATCCC CATGGGGCGG TTCCTCAAGG CCGAGGAGAT CGCCAATATG
GTCAGCTGGA TTGCCGGGCC GGAGTGCAGC TTTACCACCG GCTTCGTCTT CGACCTCAGC
GGCGGGAGGG CGACCTATTG A
|
|---|
| Protein sequence | MSQYLQGQTA IVTGGMRGIG LAIAQRLHAA GAQVVIWDLA VEGWSNAENG FEPVLRQAVD
VSSLASVETA FAETLRRIGQ VQILVNNAGI NGPVVSSWEY PPEAWDKVIA IDLNGVFYCC
RTAIPHMRDN GYGRIVNIAS MAGKDGVQYI SAYSAAKAGV IAFTKAAAKE LAQDGVLLNC
VAPAMVETPL MAEMTAEHIA ASKAKIPMGR FLKAEEIANM VSWIAGPECS FTTGFVFDLS
GGRATY
|
|---|
| |