Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2339 |
Symbol | |
ID | 5870128 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 2611950 |
End bp | 2614352 |
Gene Length | 2403 bp |
Protein Length | 800 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641547464 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001668576 |
Protein GI | 167033345 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGCAG TAAAGTCTTG CCGCCCGCGC CCACTGGCGC GCGCAGCACA TCCGTTGTTT GCGATGAGCC TGTTGTTGTG TGCACCGGCG TGGGCCGATG AGCCTGCCCG GCGTACCTAC CAGGTAGCAC CCGCCAGCCT GGGCACCGCG TTGACCCACT TCGCCGACCA GGCTGGTGTC AGCCTATCGC TGGACCCGGC ACTGGTCCAG GGCCGGCACA GCAGCGGTCT GTCCGGTAAC TACAGTGTCG AAGAGGGCTT CTTGCAGCTG CTGCGCGACA GCGGTTTGCA GTTGATGCCG GTGGGTGAGG GCGCCTTCAC CCTGGTACCA ACACAGTCCA GCGGCGCACT GGAAATCGCC CCGACCAGCA TCGTCGGCGG CTTGGCTGCA GGTAGCGAAA CGCAGCCATA CGCCGGTGGC CAGGTGGCGC GCCAGGGCGC TCAAGGCCTG CTGGGTTCGC GTGATTTCAT GGAAACCCCA TTCAGCATCA CCAGCTACAC CAGCGAGCTG GTGAAGAACC AGCAGGCACG TACCTTGGGT GAGTTGATTG CCAGTGATCC CTCGGTGCGC GCGACCAACC CGGCGGGTGG GCGTTTCGAG CAGTTCACCA TTCGCGGCTT CAGCCTGTTC AACAGTGATG TGGCGTACAA CGGCCTATAC GGCATCTTGC CGACCTACTC GATCGACATG GAAATGGCCG ACCGGGTCGA CATCATCAAA GGCCCCAGCC AGTTGATCAA CGGCATTTCG CCCCGTGGCA GCGTGGGCGG CGGGATCAAT GTGCAGCCCA AGCGGGCCGG CGACAAGCCG ATCACCGCGT TCACCGGCAG CTATGCGTCG GCTGGGCAGG CAGGTGGCGC CGTGGACGTT GGTCGACGCT TTGGTGAAGG GCAGCAGTTC GGCGTGCGTT TCAATGGGGT GAAGCAGGCC GGTGACACCG AATGGGACCA CCAGCGTGTC GATCGCGAAA TGGCCGTGCT GGGCCTGGAT TTTCGCGGCG AGCGGCTGCG GCTTTCAGCG GACCTCGGGC ATACCGAGCG TGATACCGAC GCGCCGCAGG AGCGTGTGCT GGTGGGTGCG AATGCCAAGG TGCCGGATGC CAATGACGTA CGCCACAACT ACGCTCAGGC CTGGAGCAAG GCGCGCACCA ACGACACCTT CGGTGCGCTG AACGCCGAGT ACGATATCAG CGAATCGCTG CTGGCCTATG GGGCAGTCGG CGCGCGCAAG AGTAACCATG ACTTCCTGCG CCACAACGTG TCTATTACCA ACGATGCCGG CGATTTCACC GTTCAGCCGC GCGATTTCAC TCGCGACGAA TCGGTGCGCA CCGCCATGGC CGGCCTGCGC AGCTGGTTTC ATACCGGGCC GGTCAGCCAT GAGCTGAACC TGGCCGCCAG CTATTTCTAC ATGGACTTCA CCAACGGCGG TGCGCGTTAT GCCTCGGCGC CGAGCAACCT CTACAACCCG GTTGCCACCC CGACACCGGG TACGCCAACC CGCATCGACC CGCAGGTTTA CACGGAGAAC CGCTTCTCCG GCGTGGCCCT GGCCGACACG CTGGGCTTTT TCGCCGACCG TCTGCTGCTG ACCCTGGGGG CGCGCTGGCA GCGGGTGCAG GTGGATGACT GGAGCGACGG CATCAAAGGC GACACGGCCT ATGACGAAGA AAAGGTCTCA CCGTCGGGTG GCGTGTTGCT CAAGGTGACC GACCAGCTGT CGTTGTACGC CAACTACATG GAGGGCCTGA GCCAAGGCAA GATCGCGCCA TCGACCTCGA TCAACGAGGA CCAGATTTTC CCGCCGTTCA CCAGCCGCCA GGTTGAGGTA GGGGCCAAGT ACGATTTTGG CCAGGTGGCG TTCACAGCCA GCGCCTTCCG CATTCGCCAG CCGGCCTACG AAACCAACGC CACCTCGCGG GTGTTCGGCC CCAACGGCAA GCGCGACAAC CGTGGGATCG AGCTGAGTGT GTTTGGTGAG CCTGTACAGG GGGTGCGCGT ACTGGGTGGG GTGATGTACA TCGACAGCGA GCTTACCGAT ACCGTGGGTG GCGCCTTCGA TGGCAACCGC GCGCCAGCGA CGCCCGAATA CAACGTCAAT CTCGGTGCCG AGTGGGATGT GCCGGGCGTG AACGGCCTAA CCCTGACGGC GCGGGGCATT CATTCCAGTT CGCAGTACCT GGACCAGAAC AACAGCAAGC AGATCGACGG CTGGGAGCGG TATGACCTGG GGGCGCGCTA TGCCTTCAAG GTGGATGCTG CCGAGGTGAC CTTGCGTGCC AGTGTCGAGA ATGTGCTGGA TGACCGTTAC TGGAGCTCGG CGGGGGCTTC GGATGACAGT GAGCCCGGCT TGACCCTTTC CACACCGCGC ACCTACTTGC TGTCGGCCAC AGTAGGTTTT TAA
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Protein sequence | MPAVKSCRPR PLARAAHPLF AMSLLLCAPA WADEPARRTY QVAPASLGTA LTHFADQAGV SLSLDPALVQ GRHSSGLSGN YSVEEGFLQL LRDSGLQLMP VGEGAFTLVP TQSSGALEIA PTSIVGGLAA GSETQPYAGG QVARQGAQGL LGSRDFMETP FSITSYTSEL VKNQQARTLG ELIASDPSVR ATNPAGGRFE QFTIRGFSLF NSDVAYNGLY GILPTYSIDM EMADRVDIIK GPSQLINGIS PRGSVGGGIN VQPKRAGDKP ITAFTGSYAS AGQAGGAVDV GRRFGEGQQF GVRFNGVKQA GDTEWDHQRV DREMAVLGLD FRGERLRLSA DLGHTERDTD APQERVLVGA NAKVPDANDV RHNYAQAWSK ARTNDTFGAL NAEYDISESL LAYGAVGARK SNHDFLRHNV SITNDAGDFT VQPRDFTRDE SVRTAMAGLR SWFHTGPVSH ELNLAASYFY MDFTNGGARY ASAPSNLYNP VATPTPGTPT RIDPQVYTEN RFSGVALADT LGFFADRLLL TLGARWQRVQ VDDWSDGIKG DTAYDEEKVS PSGGVLLKVT DQLSLYANYM EGLSQGKIAP STSINEDQIF PPFTSRQVEV GAKYDFGQVA FTASAFRIRQ PAYETNATSR VFGPNGKRDN RGIELSVFGE PVQGVRVLGG VMYIDSELTD TVGGAFDGNR APATPEYNVN LGAEWDVPGV NGLTLTARGI HSSSQYLDQN NSKQIDGWER YDLGARYAFK VDAAEVTLRA SVENVLDDRY WSSAGASDDS EPGLTLSTPR TYLLSATVGF
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