| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2333 |
|---|
| Symbol | |
|---|
| ID | 5870122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2605283 |
|---|
| End bp | 2607370 |
|---|
| Gene Length | 2088 bp |
|---|
| Protein Length | 695 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641547458 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001668570 |
|---|
| Protein GI | 167033339 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGACCG GTAGCTACTC CTCTTCGCTG GTGTTGATTT CGCTGTGCGT GGCGATCCTG
GCGTCCTATA CCGCCCTCGA TCTGACCGGC CGTATCGCCA CGGCCAAGGG CCGAGCTGCC
TACCTGTGGA TGGGCGGCGG TGCGCTGGCC ATGGGCATCG GCGTGTGGTC GATGCACTTC
ATTGGGATGC TAGCCTTCAG CTTGCCCATC GACCTGGGTT ACGACCTTGC CCTGACCGCG
TTCTCGCTGT TGATTGCCGT GCTGTCCTCG GGCTTTGCCT TGTGGTTGGT CAGCCAGCCG
AGCCTGCCGG CGCTGCAACT GGGGCTTGGC GCGTTGATCA TGGGCGCTGG CATCGCCTGC
ATGCATTACA CCGGTATGGC CGCGCTGCGC ATGCTGCCGG GTATCGATTA CGACCCGACG
TTGTTCGGCG CCTCGTTGCT GATTGCCGTG GGCGCCTCGG CGGCGGCGTT GTGGATCGCC
TTCCGCCTGC GCAGGCACAC CCCCTACGTG CGGCAGATTC GAGGCCTGGC GGCGGTGGTC
ATGGGCTTTG CCATCGTCGG CATGCATTAC ACCGGTATGG CGGCGGCGAA TTTCCCCGAG
GGCAGCTTCT GTGGTGCGCT GGGCGGCGGG CTGCAGGGTG AGGGCCTGGT CTACCTGGTA
CTGATCACCA CCCTGGCGGT ACTGGCTGTG GCTTTGTTGA CCTCGGTGTT GGACGCACGC
CTCGAAGCGC GTACGGCCGA GCTGGCCCGT TCGCTGACCT TGGCCAACCA AGAGCTCACC
CAACTGGCCC TGCACGACAC CCTCACCGAT CTGCCCAACC GTACCTTGCT GGCCGACCGT
ATCGAGCAGG CCATCGCCAA GGTAGCGGAG CAGGGCGGTT GCTTTGCCCT GATGTTCATC
GACCTGGACG GCTTCAAACC GGTCAACGAT GCCTTTGGCC ATCACATCGG CGACCTGCTG
CTCAAGGCCG TGGCGGCGCG CCTGCGTGGC CACCTGCACA GCCAGGACAC CCTGGCGCGA
ATTGGCGGTG ACGAGTTCGT GCTGTTGGTG GAACTGCAGG AGCCGAATGA TGCCATGGAC
GTGGCGGTCA AGCAGGTCAA CCTGGTGTCA CGGCCATTTC GCGTGGCCGA GCACGACCTG
CAACTGTCGG CCAGCCTGGG CATCGTCCTG TACCCAGGCA ACGGCCAGGA CCAGCATGAG
TTGCTGCGCA ATGCCGACGC GGCCATGTAC CACGCCAAGA GCGCCGGCAA GAACGGCTAC
AGCTTCTTCG ATGTGTCGAT GAACAGCAAC GCCCGCCAGC AACTGCAGTT GTTGCAGGAC
TTGCGCCAGG CACTGGAACA GCGCCAGTTC CGCCTGCATT ACCAGCCCAA GTTCGACGCC
CAAGCCTGCC AGCCGATCGG CGCCGAGGCG TTGTTGCGCT GGGAGCACCC GCAGCATGGC
CTGCTGCTGC CCGACCGTTT CATCGGCCTG GCGGAAAAGA CCGGCCTGAT CATTCCTATT
GGTGAGTGGG TGTTGATAGA GGCCTGCCGG CAGATGCGCC AGTGGCTGGA CCAGGGCCAC
AACGGCTGGC GCATGGCGGT GAACCTGTCG GCCATCCAGT TCTGCCACGC CGGGCTGGTA
GAGAGCGTGG CACGCGCCCT GGAGCAGAAT GGCCTGCCCG CCAACTGCCT GACCCTGGAA
ATCACCGAAA CCACCGCCAT GCACGACGCC GACGCCAGCC TGACCGTGTT GCAGCGCCTG
TCCGACATGG GTGTGGACCT GTCCATCGAT GACTTTGGCA CCGGCTATTC CAGCCTGATG
TACCTCAAGC GCTTGCCAGC CAACGAGCTG AAGATCGACC GCGGCTTCGT GCGCGACCTG
GAGCAGGACA GTGACGATGC CGCGATCGTT TCGGCCATTG TCGCACTGGG CCAGGCGTTG
GGCCTGCGTA TCGTTGCCGA GGGGGTGGAG ACCGACATGC AGCAGGACTT CCTGACCCGC
TTGGGTTGCG ATTCGCTGCA GGGTTACCTG CTGGGCCAGC CGGTGCCGGC CGAGCAGTTC
ATGGGCAAGT TGCGGGCGAT GGGCGAGGAA AGTAACGCTG CGGGCTAG
|
|---|
| Protein sequence | MLTGSYSSSL VLISLCVAIL ASYTALDLTG RIATAKGRAA YLWMGGGALA MGIGVWSMHF
IGMLAFSLPI DLGYDLALTA FSLLIAVLSS GFALWLVSQP SLPALQLGLG ALIMGAGIAC
MHYTGMAALR MLPGIDYDPT LFGASLLIAV GASAAALWIA FRLRRHTPYV RQIRGLAAVV
MGFAIVGMHY TGMAAANFPE GSFCGALGGG LQGEGLVYLV LITTLAVLAV ALLTSVLDAR
LEARTAELAR SLTLANQELT QLALHDTLTD LPNRTLLADR IEQAIAKVAE QGGCFALMFI
DLDGFKPVND AFGHHIGDLL LKAVAARLRG HLHSQDTLAR IGGDEFVLLV ELQEPNDAMD
VAVKQVNLVS RPFRVAEHDL QLSASLGIVL YPGNGQDQHE LLRNADAAMY HAKSAGKNGY
SFFDVSMNSN ARQQLQLLQD LRQALEQRQF RLHYQPKFDA QACQPIGAEA LLRWEHPQHG
LLLPDRFIGL AEKTGLIIPI GEWVLIEACR QMRQWLDQGH NGWRMAVNLS AIQFCHAGLV
ESVARALEQN GLPANCLTLE ITETTAMHDA DASLTVLQRL SDMGVDLSID DFGTGYSSLM
YLKRLPANEL KIDRGFVRDL EQDSDDAAIV SAIVALGQAL GLRIVAEGVE TDMQQDFLTR
LGCDSLQGYL LGQPVPAEQF MGKLRAMGEE SNAAG
|
|---|
| |