| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2256 |
|---|
| Symbol | |
|---|
| ID | 5870045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2517353 |
|---|
| End bp | 2519536 |
|---|
| Gene Length | 2184 bp |
|---|
| Protein Length | 727 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641547381 |
|---|
| Product | GAF sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001668493 |
|---|
| Protein GI | 167033262 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.903593 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAAT GGTTAGACGG CGGCGGCTTG ATGGCCGAAC GCATCCGCAA CCACGACTGG
ACACGTACCA GCCTCGGCCC GCTCGAGGCC TGGCCGGATG CACTCAAGAC CACCGTGGCG
CTGTGCCTGG CCTCGCGCTT CCCACAGGCC GTGTTGTGGG GCCCCGACCT GCTTACCCTG
CACAACGACG CCTTCTTGCC AATCCTCGGG CAGAAACCCT TGGCCCTGGG CGTCCCCTTC
CGCGAGGTCT GGCAAGAAGC TTGGGCCGAC ATCAGCAGCA TGGCCGACCG TGCATTGGCC
GGTGAAGCGG TGTACATCGA AGACTTCCCG TTGGCGATCG TGCGTAACGG CTGCCCCGAG
CGTGCCTATT TCACCTTCTG CTACAGCCCG ATACGCGGCC ATGACGGCAA GGTGCTGGGC
ATGCTCGACA CGGTCACCGA AACCACCGCC AGCGTGGTCA CCAACCAGCG CCTGAATTTT
CTCGACAACC TTGGGCGCGC CGTGACCGAG GCCAACGACC CGGACCAGAT CATGGCCATC
ACCACCCGCA TGCTGGTCGA GCACCTTGGC CTGTCCAGCT GTGCCTATGC GGTGATGGAG
CCGGACCAGG ATGGCTTCAC TATCTGCGGC GACGCGGTGG CACCCGGTTC ACCACGCCTG
GTGGGCCAGT ACCACCTGCA TGACTTCGGC CACATGGCGG TCAGCCGACT GCGCAGCGGC
CTGGCTTTGG TGATCAACGA CAACCTCCGC GAGCTGGCGG CTGACGAGGC GGCAACCTTT
CAGGCCATCG GCATTACGGC CACTATCTGC ATACCGCTGA TCAAGGGTGG CAGGTTGACG
GCGCTGATGG CCATTCATGA CCGCGTGCCA AGGGTATGGA CCGACTACGA GCAAGCGCTG
ATCGGCGAAG TGACCGAACG TTGCTGGGCG CATATCCAGC GGGTGCAGGC CAATGCCGAA
GTGCGCGAGG CCATGGCAGC GCTGGAGGCG CTCAACGCCA CCCTGGAGCA CCGCGTCGAA
GAACGTACTA CCCAGTTGCT GCACACCGAA GCCGTACTGC GCCAGGCACA AAAGCTGGAA
GCCATCGGCC AGCTGACAGG TGGTGTCGCC CACGACTTCA ACAACCTGCT GACCATCATC
CGGTCCTCGC TGCACTTTCT GCAGCGCCCC GACCTGGACG AGAAACGCCG CGAACGCTAC
ATCAAGACCA TGTCCGACAC CGTGGACCGC GGCGCCAAGC TGACCGGCCA ACTGCTTGCC
TTTGCCCGCC GCCAGGCCCT CAGCCCGCAA GTGTTCGAGG CCGGCCCTCG GTTGGAAGCC
ATGGCCGAAA TGCTCGACAC CGCCACCGGC GCACGCATCC AGGTCGCACT GAAGCTGCCG
CAGGCGCCCT GCCATATCCG CGCCGACCTC AGCCAGCTGG AAACGGCGGT GATCAACCTG
ATGCTCAACG GACGCGACGC CATGGCCGGC GAAGGTACGT TGCTGCTGCG TCTGCAGGCC
GACCAGAGCC TGCCTGCCCT GCGCGGCCAG GCGCCGCAGC CTGGCCCGTT TGCGGCCATC
TCGGTGAGCG ACAGTGGTGT CGGTATTGCC AGCGAGCTGC TGGAGCGCAT TTTCGACCCG
TTCTTCACCA CCAAGGCGCC GGGTGAAGGC ACCGGGCTGG GGTTGTCGCA GGTGTTCGGG
TTTGCCAAGC AGTCTGGCGG TGACGTGCAG GTGCACAGCG TTCAGGGCCA GGGCACCACC
TTTACCCTGT ACCTGCCACA GGAGACACCG CCCGCAGCCT TGCCGGCGGA TGCCCCAAGC
AGCAGCCAGG CGCAGGCGCA GGGCGAACGA CGGCGAATAC TGGTGGTGGA GGACAACCCT
GATCTTGGCA ACTTCACCGC TCAAATCCTA GAAGACCACG GCTATCGGAT CAGCTATGCG
CGCTCGGCGG AAGAGGCCCT GACGCAGCTG GAGGGACCGG CAGGTGACTT TGATGCGGTG
TTTTCCGATG TGGTCATGCC CGGCATGGGC GGCCTGGCGC TGGCCCGTGA GCTGCGCCGC
CTGCACCCAC GGTTGCCGGT GATCCTCACG TCGGGTTACA GCGAGGCGAT TGCCGAAGGC
GGGCACCAGG GGTTCACCTT CCTGGCCAAG CCCTATTCGG CAGAACAGGT GTGCCGCCTG
CTCGGGAAAG TGCTGGGCAA CTGA
|
|---|
| Protein sequence | MAKWLDGGGL MAERIRNHDW TRTSLGPLEA WPDALKTTVA LCLASRFPQA VLWGPDLLTL
HNDAFLPILG QKPLALGVPF REVWQEAWAD ISSMADRALA GEAVYIEDFP LAIVRNGCPE
RAYFTFCYSP IRGHDGKVLG MLDTVTETTA SVVTNQRLNF LDNLGRAVTE ANDPDQIMAI
TTRMLVEHLG LSSCAYAVME PDQDGFTICG DAVAPGSPRL VGQYHLHDFG HMAVSRLRSG
LALVINDNLR ELAADEAATF QAIGITATIC IPLIKGGRLT ALMAIHDRVP RVWTDYEQAL
IGEVTERCWA HIQRVQANAE VREAMAALEA LNATLEHRVE ERTTQLLHTE AVLRQAQKLE
AIGQLTGGVA HDFNNLLTII RSSLHFLQRP DLDEKRRERY IKTMSDTVDR GAKLTGQLLA
FARRQALSPQ VFEAGPRLEA MAEMLDTATG ARIQVALKLP QAPCHIRADL SQLETAVINL
MLNGRDAMAG EGTLLLRLQA DQSLPALRGQ APQPGPFAAI SVSDSGVGIA SELLERIFDP
FFTTKAPGEG TGLGLSQVFG FAKQSGGDVQ VHSVQGQGTT FTLYLPQETP PAALPADAPS
SSQAQAQGER RRILVVEDNP DLGNFTAQIL EDHGYRISYA RSAEEALTQL EGPAGDFDAV
FSDVVMPGMG GLALARELRR LHPRLPVILT SGYSEAIAEG GHQGFTFLAK PYSAEQVCRL
LGKVLGN
|
|---|
| |