Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2167 |
Symbol | |
ID | 5869956 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 2415318 |
End bp | 2416571 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641547292 |
Product | outer membrane porin |
Protein accession | YP_001668404 |
Protein GI | 167033173 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.049218 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCACA CAACTTGCAC GCTGGCCCGT TCGGCCCTGG CGGTGTCGCT GGCGCTTGGC CTGGGTTTGC CGGCCTGGGC CGAGGAGGGC GGCTTCCTTG AAGATGCCAA GGCCGGGCTG ACACTGCGCA ACTACTACTT CAACCGCGAC TTCCGCGACG CAGGGGCGGC CAAGAGCAAG GTCGAAGAAT GGGCCCAGGG TTTCATTTTC AAGTTCAGCT CTGGCTACAC ACCGGGGCTG ATCGGTGTTG GCCTGGACGG CATCGCCATG TTCGGCGTGA AGCTGGACAG CGGCCGTGGT ACCAGCGGCT CCGAACTGCT GCCGGTGCAC GATGACCGGC GTGCGGCCGA CGACTATGGT CGCGCCGGTC TGGCGGCCAA GCTGCGTATT TGCGCGACCG AACTGAAGGT CGGTGAGCTG TTGCCGGATA TTCCGCTGCT GCGCTACGAC GATGGCCGCC TGCTGCCACA GACGTTCCGC GGGGCAATGC TCGATTCGCG CGAGATCGAA GGCCTGAGCC TGCAGGCCGG CCAGTATCGC GAGGTGAGCC TGCGCAATTC TTCCGACATG CAGGACCTTT CCGCCTGGGC CGCGCCTGGG GTGACTTCGG ATGGTTTCAA CTATGTCGGC GCCGAGTACC GCTTCAACCA GCAGCGCACG CAGATCGGCG CCTGGCATTC GCAACTGGAG GACATTTACC AGCAAAGCTA CTTCAACCTG CTGCACAGCC AGCGGCTGGG GGAGTGGACA CTGGCGGCCA ACCTTGGCTA CTTCATCGAC CGGGATGATG GACAGGCGCG CATTGGTGAT ATCCAGAGCC GCACTGGCTA CGCTTTGCTG TCGGCCTCGC ACAGTGGCCA TACCCTGTAC CTGGGGTTGC AGAAGGTCAG TGGCGACAGC CCGTGGATGT CGGTGTATGG CAGTAGCGGG CGGACCTTGG GCAACGACAT GTTCAACGGC AACTTCAGCA ACGCCGACGA GCGCTCGTGG CAAGTGCGCT ACGACTACAA TTTTGCCGCT ATGGGTGTGC CTGGGTTGCT GGCCATGGTG CGCTACGGGC ATGGTGAAAA TGCCACCACG GCGGCCGGCA GCAATGGCAA GGAGTGGGAG CGCGATACCG AAGTGAACTA CACCTTCCAG AGCGGGGCGT TGAAGAACCT CAACATCCGC CTGAACAATG CGACCAACCG GCGCAGCTTC AACAGTGATT TCGACCAGAC GCGGCTGATT GTCAGCTATC CGCTGACGTT GTAA
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Protein sequence | MMHTTCTLAR SALAVSLALG LGLPAWAEEG GFLEDAKAGL TLRNYYFNRD FRDAGAAKSK VEEWAQGFIF KFSSGYTPGL IGVGLDGIAM FGVKLDSGRG TSGSELLPVH DDRRAADDYG RAGLAAKLRI CATELKVGEL LPDIPLLRYD DGRLLPQTFR GAMLDSREIE GLSLQAGQYR EVSLRNSSDM QDLSAWAAPG VTSDGFNYVG AEYRFNQQRT QIGAWHSQLE DIYQQSYFNL LHSQRLGEWT LAANLGYFID RDDGQARIGD IQSRTGYALL SASHSGHTLY LGLQKVSGDS PWMSVYGSSG RTLGNDMFNG NFSNADERSW QVRYDYNFAA MGVPGLLAMV RYGHGENATT AAGSNGKEWE RDTEVNYTFQ SGALKNLNIR LNNATNRRSF NSDFDQTRLI VSYPLTL
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