| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1927 |
|---|
| Symbol | |
|---|
| ID | 5869716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2166406 |
|---|
| End bp | 2166903 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641547053 |
|---|
| Product | UspA domain-containing protein |
|---|
| Protein accession | YP_001668166 |
|---|
| Protein GI | 167032935 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0000483446 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000000000012349 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCT CCATGCTGTA CGCCACCGAC CTCGGTGTCT ACGCCCCTTT CGTGATGCAG
CACGCGCTGG CGTTGGCGCG CACGTTCAAC GCCGAATTGT ATGTGATTCA CGCGGTAGAG
CCGATGGGCC AGTTCGCCGA ATCCCTCCTG CAAAGCTACC TCGATGAGCA GACGCTCGAC
CAGTTGCATA GCCAAGGCGT GAACACGGTG ATGGCGAATA TAGAGCAGCG GGTGCTGGAA
AGCTTTCGCG ACGAGCTAGG TGAAGAAGCC GATCTGGCGG TGATCAGAGC CGTGCGGGTA
CGGCAGGGCG ACCCGGCCCA AGTGATTCTC GACCAGGCGC AGCGGCTAAG CGTCGACCTG
TTGATATTCG GTAGCCACAG CGCCGGTGCC GGGGTGGACG TACCGCTGGG GCGCACGGCG
GTGCGGCTGC TGCAATTGTC GCCGGTGCCG GTGTACATGG TGCCTTTGGC GCAGCACCTG
GGGCGTAGGA AAACATGA
|
|---|
| Protein sequence | MIRSMLYATD LGVYAPFVMQ HALALARTFN AELYVIHAVE PMGQFAESLL QSYLDEQTLD
QLHSQGVNTV MANIEQRVLE SFRDELGEEA DLAVIRAVRV RQGDPAQVIL DQAQRLSVDL
LIFGSHSAGA GVDVPLGRTA VRLLQLSPVP VYMVPLAQHL GRRKT
|
|---|
| |