| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1912 |
|---|
| Symbol | |
|---|
| ID | 5869701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2151991 |
|---|
| End bp | 2153469 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641547038 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001668151 |
|---|
| Protein GI | 167032920 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.407863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000000143908 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGCCT GGCTTAGCAA CGTTTCCTTG AAGTACAAGT TCTGGGCCGT CAACGCGGTG
GCCTTTGTGA CCACCTTGCT GCTGGTGCTG TATGCCGTGC ACCTTGAGCA ACGCGCACGC
GCCGAGGCAG CGCAGGAGCA AGCGGCCGCG CAAGCCCAGT TGTTGGCCAC CTGGCCAGCC
GGGCAAACAC TGCCGCGCCC GGCCAACGTC ATCAGCTGGT CGGCCGGGCA AACGCCAACC
TTCGCCGGTG AGGCCCTTGA AGCCCTGCGC AACGCCCAGG GCTGGGTTGC ACTGCCCAGC
GCCTGGATCC TCGGTGACAA CCCGCTGCGC GGCGCACAGG TACTGCGCAA CGGCGACCAG
CAGGTTGCCG TGCTGGCCCA GTCGCCCAGC CTGCGCCAGG TATTCTTCGA TCGCTTCAGC
AATTACGCGG TGTGCGTGCT GATATTGATG CTGGCCATGC TCGGCGCCTC ACAACTGCTG
ATCCGCTTCC TGCTCAGCCA GCTCAATACC CTCAAGGACG TGATGCTGCA CGTGGAAAAA
ACCGGCGAAC TGGCGGCTCG GGTACCGCTA GCCTGTGGCG ACGAGGTCGG CCAGATGGCC
GGGGCCTTCA ACGCCATGCA GGCAACCTAT CACCGCGTGG TCAGCACCGT CGCCCATACC
GCTGCACAGT TGGACTCAGG TGCCGCACGC CTGGCCGCCA GCATGAGCGA CGTGCGCCAC
GGCATGCTTG GCCAACAGAG CGAAACCGAT CAAGCGGCCA CCGCCATCAA CGAAATGTCG
GCGACGGTGC ACCACATTGC CCAGCACGCC GGCGCCACCC GCGACTTGTC ACAATCCGCC
GACACCCTGG CCGGCAGTGG CAAAGAGGTG GTCAGCCGGG TGCAGGATTC GATTTCCGGG
CTTTCCAGCG GCGTGCAGCA AACTGCCGAG ATGATTCGTC AGCTGGCTGA AGACAGCCAG
AAAATCAACG GCGTGGTCAG TGTGATCCAC AGTATTGCCG AACAGACCAA CCTGCTGGCG
CTCAACGCCG CCATCGAAGC AGCGCGCGCC GGTGACTTGG GGCGCGGCTT TGCCGTGGTG
GCCGATGAAG TGCGCAACCT GGCCAAACGC GTGCAATCCT CCACAGACGA GATCACCACC
ATGGTTTCGG CCCTGCAGTC GGGCACCCGC GATGCAGTGG AGTTCATGCA GGAAAGCTCG
TACAAGGCCG ACGACTGCGT GCGCCAGGCA CAGGAAGCCG GTGAGGCGCT GGCCGAAATC
ACCGGTGCCG TGGCGCAAAT GCGCGAAAGC AATACCCAGA TTGCTGTGGC GGCCGAGCAG
CAAAGCCAGG TGGCCGAGGA AATGAACCGC GCGGTGGTGA GCATCCGCGA TGTCACCGAG
CAGACCGTGC AGCAGACAGT GAGCTCGGCG ACCACCAGCA GCGAACTGGC GACCCTGGCA
GGCGAACTGA GCAAAGCCAT TGGCCAGCTC AAGCTATAG
|
|---|
| Protein sequence | MGAWLSNVSL KYKFWAVNAV AFVTTLLLVL YAVHLEQRAR AEAAQEQAAA QAQLLATWPA
GQTLPRPANV ISWSAGQTPT FAGEALEALR NAQGWVALPS AWILGDNPLR GAQVLRNGDQ
QVAVLAQSPS LRQVFFDRFS NYAVCVLILM LAMLGASQLL IRFLLSQLNT LKDVMLHVEK
TGELAARVPL ACGDEVGQMA GAFNAMQATY HRVVSTVAHT AAQLDSGAAR LAASMSDVRH
GMLGQQSETD QAATAINEMS ATVHHIAQHA GATRDLSQSA DTLAGSGKEV VSRVQDSISG
LSSGVQQTAE MIRQLAEDSQ KINGVVSVIH SIAEQTNLLA LNAAIEAARA GDLGRGFAVV
ADEVRNLAKR VQSSTDEITT MVSALQSGTR DAVEFMQESS YKADDCVRQA QEAGEALAEI
TGAVAQMRES NTQIAVAAEQ QSQVAEEMNR AVVSIRDVTE QTVQQTVSSA TTSSELATLA
GELSKAIGQL KL
|
|---|
| |