| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1906 |
|---|
| Symbol | |
|---|
| ID | 5869695 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2146390 |
|---|
| End bp | 2148261 |
|---|
| Gene Length | 1872 bp |
|---|
| Protein Length | 623 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641547032 |
|---|
| Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
|---|
| Protein accession | YP_001668145 |
|---|
| Protein GI | 167032914 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.279691 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000032833 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAAA ATATCAGGGA CAATTCACAA GGTTGGATTG CCAAGACCAT CATCGGCCTT
ATCGTCGTGT TGATGGCGTT GACCGGCTTC GAAGCCATTT TTCAGGCCGC CACCCATAGC
CAGGACGCCG CCAAGGTGAA CGGCCAGACC ATCAGCCAGA ACGAGCTGAG CCAGGCGGCC
GACATGCAGC GCCGTCAGCT GATGCAACAG TTGGGCAAGG ATTTCGACCC AGCGCTGCTG
GATGACAAAT TGCTGCGTGA AGAGGCCCTC AAGGGCTTGA TCAGCCGCAA GCTACTGCTG
CAAGGCGCCG AAGATGCCAA GTTCGCCTTC TCCGAGGCCG CGCTTGATCA GGTGATCCTG
CAGACGCCGG AGTTTCAGGT GGACGGCAAG TTCAGTGCCG ACCGTTTCGA CCAGGTCATC
CGCCAGATGG GCTACGGTCG CATGCAGTTC CGCGAGATGC TCGCCGAGGA AATGCTCATC
GGCCAGCTGC GCACCGGTCT GGCTGGCAGC AGCTTCGTGA CCGATCAGCA GGTTGACGCC
TTTGCTCGCC TCGAGAAGCA GACGCGCGAC TTCGCCTCCC TGACCTTCAA GGCCGACCCG
GCTGCGGTCA AGGTCAGCGA AGAAGAGGTG AAGGCGCACT ACGACCAGCA CGCCAAGGAG
TTCATGTCGC CTGACCAAGT AGTGATCGAC TACATCGAGC TGAAGAAGTC GGTGTTCTTC
GACCAGGTCA AGGTCACCGA CGAAGAACTC AAGGCCCAGT ACGAGAAGGA AATCGCCAAC
CTCGCCGAGC AGCGCCATGC CGCGCACATC CTCATCGAGG TCAACGACAA GGTCACCGAA
GCGCAGGCCA AGGCCCGCGC CGAAGAGATC GAGCAGCGCC TGGCCAAGGG TGAAGACTTC
GCCGCGCTGG CCAAGGAGTT CTCCCAGGAC CCAGGCTCGG CCAACAACGG CGGCGACCTC
GGCTTTGCCG GCCCGGGTGT ATACGACCCA GCCTTCGAAG ACGCGCTCTA CAAGCTGCAG
GATGGCCAGG TATCGACGCC GGTGCGTACC GAGTTTGGCT ACCACCTGAT CAAGCTGCTG
GGCGTGCAGG CGCCAGAAGT ACCAAGCTTC GCCAGCCTGA AGGACAAGCT GACCCGCGAC
CTGAAGATTC CGTTGGTCGA GCAGCGTTAT GTCGACGCCA GCAAGCAACT GCAGGATGCA
GCCTACGAGG CTTCCGACCT GGCCCAGCCG GCCCAGGACC TGAACCTCAA GGTGCACACC
TCTGCAGCGT TTGGCCGCGA AGGCGGTGAG GGCATCACGG CCAACCGTTC AGTGGTGCAG
GCCGCGTTCT CCGAAGAAGT GCTGGATGAG GGTGCCAACA GCACCGCAAT CGAACTCGAC
CCGGAAACCA CTGTAGTGCT GCGTGTCAAG GAGCACCGCA AGCCAGAGCA ATTGCCGCTG
GAAGCTGTGG CCAAGAACAT CAGCGAACAC CTGGCCAAAG AGAAGGCGAC TGCCGAGCTC
AAGGCCAAGG CGGACAAGCT GATTGCCGGC CTGCGTGATG GTTCCATCGC AGCAGGTAGC
GTGCATGAAG GGCAAGGCTG GAAAGCTTAT GAAGCAGTTA CCCGTGGTGA GGACGGCATT
GACCCGGCCG AGCTGCAGGC GCTGTTCCGC CTGGGCAAGC CGCAAGCCAA GGACAAGCCG
GTTTATGGCA GCGTAGTGCT GCGCGACGGT AGCCTGGTAG TACTGCAGCT CAAGGGCGTC
AACGAAGGCG CAACTGCCAC CGACGAAGAG AAGCAGCAGA TCCGCCGCTA CCTTGCGTCG
CGCGCTGGCC AGCAGGACTT CGCGGCCTAC CGCAAGCAGC TGGAAGCCAA TGCGGATATC
ACCCGTTACT AA
|
|---|
| Protein sequence | MLQNIRDNSQ GWIAKTIIGL IVVLMALTGF EAIFQAATHS QDAAKVNGQT ISQNELSQAA
DMQRRQLMQQ LGKDFDPALL DDKLLREEAL KGLISRKLLL QGAEDAKFAF SEAALDQVIL
QTPEFQVDGK FSADRFDQVI RQMGYGRMQF REMLAEEMLI GQLRTGLAGS SFVTDQQVDA
FARLEKQTRD FASLTFKADP AAVKVSEEEV KAHYDQHAKE FMSPDQVVID YIELKKSVFF
DQVKVTDEEL KAQYEKEIAN LAEQRHAAHI LIEVNDKVTE AQAKARAEEI EQRLAKGEDF
AALAKEFSQD PGSANNGGDL GFAGPGVYDP AFEDALYKLQ DGQVSTPVRT EFGYHLIKLL
GVQAPEVPSF ASLKDKLTRD LKIPLVEQRY VDASKQLQDA AYEASDLAQP AQDLNLKVHT
SAAFGREGGE GITANRSVVQ AAFSEEVLDE GANSTAIELD PETTVVLRVK EHRKPEQLPL
EAVAKNISEH LAKEKATAEL KAKADKLIAG LRDGSIAAGS VHEGQGWKAY EAVTRGEDGI
DPAELQALFR LGKPQAKDKP VYGSVVLRDG SLVVLQLKGV NEGATATDEE KQQIRRYLAS
RAGQQDFAAY RKQLEANADI TRY
|
|---|
| |