| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1898 |
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| Symbol | |
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| ID | 5869683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2135580 |
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| End bp | 2137319 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641547020 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001668137 |
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| Protein GI | 167032906 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.477877 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0669246 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGATA ACAAGCACAA CAGGCGACAT TTGACCCTGG CCGCATTGCT GGTACTGGCC
AGCGTGCAAG GCTCAGCCTG GGCCGACCAG TACGAAGATG CGGCCAAAAA ATGGATCGGC
AGCGAGTTCA AGCCTTCGAC CCTTACCCCA GAGCAGCAGT TGGCTGAACT GCAGTGGTTT
ATCAAGGCCG CCGAACCGTT CCGTGGGATG AAGATCAATG TGGTGTCGGA AACCATCACC
ACCCATGAAT ACGAGTCCAA GGTGCTGGCC AAGGCTTTCA GCGAGATCAC CGGCATCCAG
CTGACCCACG ACCTGCTGCA GGAAGGCGAC GTGGTGGAAA AGCTGCAGAC ACAGATGCAG
TCGGACAAGA ACATCTACGA CGGCTGGGTC AATGACTCCG ACCTGATCGG TACGCACTTT
CGCTACGGCA AGGTCGAATC GATCACCGAC CTGATGGCTA ACGAGGGCAA GGACTACACC
TCGCCGACCC TCGACCTGAA GGACTTCATC GGTATTTCGT TCACCACCGC GCCTGATGGC
AAGGTCTATC AGTTGCCCGA CCAGCAGTTC GCCAACCTGT ACTGGTTTCG TGCCGACTGG
TTCGAAAGGC CTGAGCTGAA AGCCAAGTTC AAGGAGAAGT ACGGCTACGA GCTGGGTGTG
CCGGTGAACT GGTCGGCCTA CGAGGACATT GCCAAGTTCT TCACCGAAGA CGTCAAGGAG
ATCGACGGCA AGCGCGTCTA TGGCCATATG GACTACGGCA AGAAAGACCC ATCGCTGGGC
TGGCGCTTTA CCGATGCCTG GTTCTCCATG GCCGGTGGCG GCGACAAGGG GCTTCCCAAC
GGTTTGCCGG TGGATGAATG GGGCATTCGC GTGGAGGACT GCCACCCGGT GGGCTCCAGC
GTGACCCGTG GCGGCGACAC CAATGGGCCA GCCGCCGTCT ATGCCACGCA AAAGTATGTG
GACTGGATGC GCGCCTACGC GCCCAAGGAA GCCCAGGGCA TGACCTTCTC CGAAGCCGGC
CCGGTGCCGG CGCAGGGCAA CATCGCCCAG CAGATCTTCT GGTACACCGC GTTCACCGCC
GACATGACCA AGCCCGGCTT GCCGGTGGTG AATGCCGACG GCACACCGAA GTGGCGCATG
GCGCCCTCGC CGAAGGGGCC GTATTGGGAG GAGGGGATGA AACTGGGCTA CCAGGACACC
GGCTCGTGGA CGTTCTTCAA GTCCACCCCC GAGAAGCAAC GGCTGGCGGC ATGGTTGTAT
GCCCAATTCG TCACCTCCAA GACCGTGTCG CTGAAAAAGA CCATCGTCGG CCTGACGCCG
ATTCGTGAGT CGGACATCAA CTCCCAGGCC ATGACCGAGC TGGCGCCCAA GCTCGGTGGG
CTGGTCGAGT TCTATCGCAG CCCGGCGCGG GTGCAGTGGA CGCCAACCGG CACCAACGTG
CCGGACTATC CGCGCTTGGC GCAGTTGTGG TGGAGCCATA TTGCCGAAGT GGCCAGTGGC
GAGAAGACCC CGCAGGAGGC GCTGGATGGC CTGGCCCGCG ACCAGGATCG CATGATGGAA
CGCTTGCAAC GCTCCAATGC CCAGGCGACC TGTGCACCGA AGCTGAACCC AGAGAAGGAC
GCACAGTACT GGTTCGACCA GCCGGGTGCA CCGAAGCCCA AGCTGGCCAA CGAAAAGCCC
AAAGGCGAGA CGGTCAGCTA CAACGAACTG TTGAAGTCGT GGGAGGCGGC CAGGAAGTGA
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| Protein sequence | MFDNKHNRRH LTLAALLVLA SVQGSAWADQ YEDAAKKWIG SEFKPSTLTP EQQLAELQWF
IKAAEPFRGM KINVVSETIT THEYESKVLA KAFSEITGIQ LTHDLLQEGD VVEKLQTQMQ
SDKNIYDGWV NDSDLIGTHF RYGKVESITD LMANEGKDYT SPTLDLKDFI GISFTTAPDG
KVYQLPDQQF ANLYWFRADW FERPELKAKF KEKYGYELGV PVNWSAYEDI AKFFTEDVKE
IDGKRVYGHM DYGKKDPSLG WRFTDAWFSM AGGGDKGLPN GLPVDEWGIR VEDCHPVGSS
VTRGGDTNGP AAVYATQKYV DWMRAYAPKE AQGMTFSEAG PVPAQGNIAQ QIFWYTAFTA
DMTKPGLPVV NADGTPKWRM APSPKGPYWE EGMKLGYQDT GSWTFFKSTP EKQRLAAWLY
AQFVTSKTVS LKKTIVGLTP IRESDINSQA MTELAPKLGG LVEFYRSPAR VQWTPTGTNV
PDYPRLAQLW WSHIAEVASG EKTPQEALDG LARDQDRMME RLQRSNAQAT CAPKLNPEKD
AQYWFDQPGA PKPKLANEKP KGETVSYNEL LKSWEAARK
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