| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1689 |
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| Symbol | |
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| ID | 5869469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 1912471 |
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| End bp | 1915896 |
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| Gene Length | 3426 bp |
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| Protein Length | 1141 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641546806 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001667928 |
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| Protein GI | 167032697 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.281852 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCCA CGGCCGGCAA ACAAACCTGG GGCAACCTGC CCGGTGCCGC CCTCAGCCTT
GCCATCGCCG AGGCCGCCAC CAGCGCTGGC CGCTTCACCC TGCTGCTGAC AGCCGACAGC
CAGGCCGCCG ACCGTCTGGA GCAGGAGCTG CGCTTCTTCG CCCCGGACCT GCCGGTGCTG
CCGTTCCCCG ATTGGGAAAC CCTGCCCTAC GACCTGTTCT CGCCGCACCA GGACATCATT
TCCCAGCGCA TCGCCAGCCT GTACCGCCTG CCGGAACTGA GCCACGGCAT CCTCGTGGTG
CCGATCACCA CCGCCCTGCA CCGCCTGGCA CCCACGCGCT TCCTGCTGGG CAGCAGCCTG
GTGCTGGATG TGGGCCAGAC CATCGATGTG GAACAGATGC GCACGCGCCT GGAGGCCAGC
GGCTATCGCT GCGTCGACAC CGTCTACGAG CATGGCGAGT TCGCCGTGCG CGGCGCGCTG
ATCGACCTGT TCCCGATGGG CAGCAAGCTG CCCTACCGCA TCGACCTGTT CGATGACGAG
ATCGAGACGC TGCGCACCTT CGACCCCGAG ACCCAACGCT CGATCGACAA GGTGGATTCG
GTGCGCCTGC TGCCGGCGCG TGAATTCCCG ATGCAGAAAG AGGAAGTGAC CCGCTTCAAG
GCACGCTTTC GCGAGCGCTT CGATGTCGAT TTCCGCCGCA GCGCGATCTT CCAGGACCTG
GCCAGCGGCA TTATTCCCGC TGGCATCGAG TACTACCTGC CGCTGTTCTT CGAAGAAACT
TCGACCCTGT TCGACTACCT GCCGGCCGAC ACCCAGGTGT TCTCGCTGCC TGGCGTGGAA
CAGGCCGCCG AACACTTCTG GAACGACGTG CGTGGGCGCT ATGAAGACCG CCGTGGCGAC
CTCAGCCGGC CGCTGCTGCC ACCGGCCGAA CTGTTCCTGC CGGTGGAGGA CTGCTTCGCC
CAGCTCAAAC AATGGCCTCG GGTGGTGGTC AGCAGCGAAG ACCTCGACCC AGGTGCGGGT
CGCGAACGCT TTCCGGCACG CGCGCTACCC AACCTGGCCA TCGAAGCCAA GGCCAACCAG
CCGCTGGCCG AGCTGGCCAA CTTCCTCGAC CAGTTCCCCG GCCGCGTGCT GTTCACCGCC
GAATCAGCGG GGCGCCGTGA AGTGCTGCTG GAGCTGCTCG AGCGGCTGAA GCTGCGCCCG
CATACCGTCG ACGGCTGGGA CGACTTCGTT ACCGGCAGCG AGCGCCTGGC AATCACCATC
GCGCCGCTGG ACGACGGCCT GCTGCTGGAC GACCCAGGCC TGGCCCTGGT CGCCGAAAGC
CCGCTGTTCG GCCAGCGGGT GATGCAACGC CGGCGCCGTG ACAAACGTGG CGAAACCGCC
AACGATGCAG TCATCAAGAA CCTCACCGAG CTGCGCGAAG GCGCACCGGT GGTGCACATC
GACCATGGCG TTGGTCGCTA CCTGGGCCTG GCCACGCTGG AAATCGACGG CCAGGCCGCC
GAATTTCTCA CCTTGGAATA CGCCGAGAAC GCCAAGCTGT ACGTGCCAGT GGCCAACCTG
CACCTGATCG CCCGCTACAC CGGCAGCGAC GATGCGTTGG CACCGCTGCA CCGGCTGGGC
TCGGAGGCCT GGCAGAAAGC CAAGCGAAAA GCCGCCGAAC AGGTGCGCGA CGTGGCCGCC
GAGCTGCTCG ACATCTATGC CCGTCGCGCC GCACGCAAGG GCTATGCATT TGCCGACCCG
TCAGCCGACT ACGCCACCTT CAGCGCTGGC TTCCCGTTCG AGGAAACCCC GGACCAACAG
GCCGCCATCG AAGCCGTGCG TGCCGACATG CTGGCGCCCA AGCCGATGGA CCGCCTGGTC
TGCGGCGATG TGGGCTTCGG CAAGACCGAA GTGGCCATGC GCGCGGCATT CATCGCCGTG
CACAGCGGCC GCCAGGTGGC CGTACTGGTG CCCACCACCC TTTTGGCCCA GCAGCACTAC
AACAGCTTCC GCGACCGCTT CGCCGACTGG CCGGTGACGG TGGAGGTGAT GAGCCGCTTC
AAGTCGGCCA AGGAAGTGGC CGCCGCTGCC GCCGACCTTG CCGAAGGCAA GATCGACATT
CTCATCGGCA CCCACAAGCT GCTGCAGGAC GATGTGCGCT TCAAGGACCT GGGCCTGGCC
ATCATCGACG AAGAACACCG CTTTGGCGTG CGCCAGAAGG AACAGCTCAA GGCCCTGCGC
AGCGAGGTCG ACATTCTCAC CCTGACCGCC ACGCCGATTC CGCGCACGCT GAACATGGCT
GTGGCGGGCA TGCGCGACCT GTCCATCATC GCCACGCCGC CGGCGCGCCG CCTGTCCGTG
CGCACCTTCG TCATGGAGCA GAACAAGAGC ACGGTGAAGG AAGCGCTGCT GCGTGAGTTG
CTGCGCGGCG GCCAGGTTTA CTACCTGCAC AACGATGTGA AAACCATCGA AAAATGCGCC
GCCGACCTCG CCGAGCTGGT GCCCGAGGCA CGCATCGGCA TTGGCCATGG GCAAATGCGC
GAACGCGAGC TGGAACAGGT GATGAGCGAC TTCTACCACA AGCGCTTCAA CGTGCTGGTA
GCCTCGACCA TCATCGAAAC CGGCATCGAC GTGCCCAGCG CCAACACCAT CGTCATCGAA
CGTGCCGACA AGTTCGGCCT GGCCCAGTTG CACCAGCTGC GCGGCCGAGT TGGCCGTAGC
CACCACCAGG CCTACGCCTA CCTGCTCACG CCGACCCGGC AGAAGGTCAG TGCCGACGCC
GAAAAGCGCC TGGAAGCCAT CGCCAACACC CAGGACCTGG GCGCGGGCTT TGTGCTGGCC
ACCAACGACC TGGAAATCCG CGGTGCCGGC GAGCTGCTGG GCGAAGGCCA GAGCGGGCAG
ATCCAGGCCG TGGGCTTCAC CCTGTACATG GAAATGCTCG AGCGCGCGGT CAAGGCAATC
CGTAAAGGCA CCCAGCCAAA CCTTGAACAA CCACTGGGCG GCGGCCCGGA GATCAACCTG
CGCCTGCCGG CGCTGATCCC CGAGGACTAC CTGCCCGACG TGCATGCGCG GCTGATCCTG
TACAAACGCA TCGCCTCGGC TGCCGACGAG GAAGGCCTCA AGGACCTGCA GGTCGAGATG
ATCGACCGCT TCGGCTTGCT GCCCGAGCCA ACCAAGAACC TGATGCGCCT GACTTCGCTC
AAGCTGCACG CGGAAAAGCT CGGCATCAAG AAAGTCGATG CCGGCCCCAA TGGCGGCAAG
CTCGAGTTCG AAGCCGAAAC CCCGGTCGAC CCGCTGACCC TGATCAAGCT GATCCAGGGC
CAGCCCAAAC GATACAAGTT CGAAGGTGCT ACCCAGTTCC GTTTCCTGGT GCCGATGGAA
CGCCCCGACG AACGCTTCAA TACCCTGGAG GCGCTGTTCG AGCGCCTGAC CCCACAGCCT
GCCTAA
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| Protein sequence | MSATAGKQTW GNLPGAALSL AIAEAATSAG RFTLLLTADS QAADRLEQEL RFFAPDLPVL
PFPDWETLPY DLFSPHQDII SQRIASLYRL PELSHGILVV PITTALHRLA PTRFLLGSSL
VLDVGQTIDV EQMRTRLEAS GYRCVDTVYE HGEFAVRGAL IDLFPMGSKL PYRIDLFDDE
IETLRTFDPE TQRSIDKVDS VRLLPAREFP MQKEEVTRFK ARFRERFDVD FRRSAIFQDL
ASGIIPAGIE YYLPLFFEET STLFDYLPAD TQVFSLPGVE QAAEHFWNDV RGRYEDRRGD
LSRPLLPPAE LFLPVEDCFA QLKQWPRVVV SSEDLDPGAG RERFPARALP NLAIEAKANQ
PLAELANFLD QFPGRVLFTA ESAGRREVLL ELLERLKLRP HTVDGWDDFV TGSERLAITI
APLDDGLLLD DPGLALVAES PLFGQRVMQR RRRDKRGETA NDAVIKNLTE LREGAPVVHI
DHGVGRYLGL ATLEIDGQAA EFLTLEYAEN AKLYVPVANL HLIARYTGSD DALAPLHRLG
SEAWQKAKRK AAEQVRDVAA ELLDIYARRA ARKGYAFADP SADYATFSAG FPFEETPDQQ
AAIEAVRADM LAPKPMDRLV CGDVGFGKTE VAMRAAFIAV HSGRQVAVLV PTTLLAQQHY
NSFRDRFADW PVTVEVMSRF KSAKEVAAAA ADLAEGKIDI LIGTHKLLQD DVRFKDLGLA
IIDEEHRFGV RQKEQLKALR SEVDILTLTA TPIPRTLNMA VAGMRDLSII ATPPARRLSV
RTFVMEQNKS TVKEALLREL LRGGQVYYLH NDVKTIEKCA ADLAELVPEA RIGIGHGQMR
ERELEQVMSD FYHKRFNVLV ASTIIETGID VPSANTIVIE RADKFGLAQL HQLRGRVGRS
HHQAYAYLLT PTRQKVSADA EKRLEAIANT QDLGAGFVLA TNDLEIRGAG ELLGEGQSGQ
IQAVGFTLYM EMLERAVKAI RKGTQPNLEQ PLGGGPEINL RLPALIPEDY LPDVHARLIL
YKRIASAADE EGLKDLQVEM IDRFGLLPEP TKNLMRLTSL KLHAEKLGIK KVDAGPNGGK
LEFEAETPVD PLTLIKLIQG QPKRYKFEGA TQFRFLVPME RPDERFNTLE ALFERLTPQP
A
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