Gene PputGB1_1679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_1679 
Symbol 
ID5869459 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp1901346 
End bp1903955 
Gene Length2610 bp 
Protein Length869 aa 
Translation table11 
GC content61% 
IMG OID641546796 
ProductDNA topoisomerase I 
Protein accessionYP_001667918 
Protein GI167032687 
COG category[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I 
TIGRFAM ID[TIGR01051] DNA topoisomerase I, bacterial 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.229175 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCAAAT CGCTGGTCAT TGTGGAATCC CCGGCCAAGG CCAAGACCAT CAACAAGTAC 
CTGGGCAACC AGTACGTGGT GAAGTCGAGT ATCGGCCATA TCCGAGACCT CCCCACCAGC
GGTTCGGCCA GCGCGAGCAA AGAGCCGGCC GCCAAGCGTG GCAAGGCCGC GGGTGAGGCT
CCGGCCCTTT CGCCGAAAGA AAAAGCTCGT CGCCAGCTGG TAGCGCGCAT GGGTGTCGAC
CCCGACCATG GCTGGAAGGC GAAGTACGAA ATCCTGCCTG GCAAGGAAAA GGTGATCGAA
GAACTGCGCC GCCTGGCCAA GGATGCCGAC ACCATCTATC TCGCAACCGA CTTGGATCGT
GAGGGGGAAG CCATTGCCTG GCACCTGCGC GAGGCCATCG GCGGCGACGA CACCCGCTAC
AAGCGCGTGG TGTTCAACGA AATTACCAAG AAGGCCATTC AGGAGGCCTT CTCGCAGCCG
GGCGAGCTGG ACATCGACCG GGTCAACGCC CAGCAGGCGC GGCGCTTCCT TGACCGCGTG
GTCGGTTACA TGGTCTCGCC ACTGCTGTGG GCCAAGATTG CCCGTGGCCT GTCCGCTGGC
CGTGTGCAGT CGGTAGCGGT CAAGCTGGTG GTGGAGCGCG AGCGTGAAAT CCGCGCGTTC
ATCCCGGAAG AGTACTGGGA GATCCACGCC GACCTCGGCA CCGCGAAGAA CGCCAAGGTG
CGTTTTGAGG TGGCGCGCGA GAAGGGCGAG GCCTTCAAGC CGCTGAACGA AGCCCAGGCC
ATGGCTGCGC TAGAGAAGCT GAAGGCTTCC AGCTACAGCG TGGTCAAGCG TGAAGATCGC
CCGACCAGCA GCAAACCGTC GGCGCCGTTC ATTACTTCGA CCCTGCAGCA GGCAGCCAGT
AACCGCCTGG GCTTTGGGGT AAAGAAAACC ATGATGATGG CCCAGCGCTT GTACGAAGCC
GGCTACATCA CTTACATGCG TACCGACTCG ACCAACCTGT CGGCTGATGC CCTGGACATG
GCGCGCAGCT ACATCGAGCG TGAATTCGGC AAGCAGTACC TGCCGGAAGC GCCGCTGGTA
TACGGCAGCA AGGAAGGCGC CCAGGAGGCG CACGAAGCGA TTCGTCCTTC TGACGTGAAT
ACCCACCCGA CCAAGCTCAG TGGCATGGAG CGTGACGCCG AGCGCCTGTA CGAGCTGATC
TGGCGCCAGT TCCTGGCATG CCAGATGCCG CCTGCGCAGT ACCTGTCCAC CAGCGTTACC
GTGGCTGCCG GTGATTTCGA GCTGCGTGCC AAGGGTCGTA TCCTCAAGTT CGACGGTTAC
ACCCGTGTGC TGCCACAGCA GAGCAAGCCG GGCGAAGACG ACGTGCTGCC AGAAATGGTT
CAGGGTGAAG CGCTAAAGCT GATCCAGATC GACCCGAGCC AGCACTTCAC CAAGCCACCG
GCGCGCTTCA CCGAAGCCAG CCTGGTCAAG GAAATGGAAA AGCGCGGCAT CGGCCGCCCA
TCGACCTACG CGGCGATCAT TTCCACCATT CAGGACCGTG GCTATGTGAC CCTGCACAAC
CGCCGCTTCT ACTCCGAGAA GATGGGCGAT ATCGTCACCG AGCGCCTGTC GGAGAGCTTC
TCCAACCTGA TGGACTATGG CTTTACCGCC GACATGGAAG AGAACCTCGA CGACGTGGCC
CAGGGCGAGC GTGACTGGAA GAACGTGCTC GACGAGTTCT ACGGCGACTT CAGCAAGAAG
CTGCAGACTG CCGAGTCCAG CGAAGACGGC ATGCGCGCCA ACCAGCCGAC CATGACCAAC
ATTCCGTGCA AGGAATGTGG CCGGCCAATG ATGATCCGCA CCGCGTCCAC CGGTGTGTTC
CTGGGTTGCT CGGGTTACAC CTTGCCGCCA AAAGAGCGCT GCAAGGCCAC CGTCAACCTG
GTGCCGGGCG ACGAAATTGC CGCTGATGAC GAGGGCGAAT CGGAGTCGCG CGTGCTGCTG
GGCAAGCACC GTTGCCCGAT CTGCGCCACG GCGATGGACG CTTACCTGCT GGATGAGAAG
CACAAGCTGC ACATCTGCGG TAACAACCCC GATTGCGTTG GCTATGAGAT CGAAGAGGGC
AGCTACCGCA TCAAGGGTTA CGAAGGGCCT AGCCTGGAGT GCGACAAGTG CGGCAGCGAG
ATGCAATTGA AGACCGGTCG TTTCGGCAAG TTCTTCGGCT GCACCAACCC GGCATGCAAG
AACACCCGTA AGCTGCTCAA GAGTGGCGAG GCGGCACCAC CGAAGATGGA CAAGGTGGAC
ATGCCGGAGC TCAAGTGCGA GAAGGTCGAC GACACCTATG TGCTGCGCGA CGGTGCTTCG
GGGTTGTTCC TGGCTGCCAG CCAGTTCCCT AAAAACCGCG AAACCCGCGC GCCGCTGGTG
CTCGAGATCG TGCCGCACAA GCATGAGATC GACCCGAAGT ACCACTTCCT GTGCGATGCG
CCGCAGAAAG ACCCAGATGG CCGCCCGGCG GTAATTCGCT ACAGCCGCAA GACCAAGGAG
CAGTACGTGC AGTCCGAGGT CGATGGCAAG CCGACCGGCT GGAAGGCGTT CTACGACGGT
AATGCGTGGA AGGTTGAAGA CAAGCGCTGA
 
Protein sequence
MGKSLVIVES PAKAKTINKY LGNQYVVKSS IGHIRDLPTS GSASASKEPA AKRGKAAGEA 
PALSPKEKAR RQLVARMGVD PDHGWKAKYE ILPGKEKVIE ELRRLAKDAD TIYLATDLDR
EGEAIAWHLR EAIGGDDTRY KRVVFNEITK KAIQEAFSQP GELDIDRVNA QQARRFLDRV
VGYMVSPLLW AKIARGLSAG RVQSVAVKLV VEREREIRAF IPEEYWEIHA DLGTAKNAKV
RFEVAREKGE AFKPLNEAQA MAALEKLKAS SYSVVKREDR PTSSKPSAPF ITSTLQQAAS
NRLGFGVKKT MMMAQRLYEA GYITYMRTDS TNLSADALDM ARSYIEREFG KQYLPEAPLV
YGSKEGAQEA HEAIRPSDVN THPTKLSGME RDAERLYELI WRQFLACQMP PAQYLSTSVT
VAAGDFELRA KGRILKFDGY TRVLPQQSKP GEDDVLPEMV QGEALKLIQI DPSQHFTKPP
ARFTEASLVK EMEKRGIGRP STYAAIISTI QDRGYVTLHN RRFYSEKMGD IVTERLSESF
SNLMDYGFTA DMEENLDDVA QGERDWKNVL DEFYGDFSKK LQTAESSEDG MRANQPTMTN
IPCKECGRPM MIRTASTGVF LGCSGYTLPP KERCKATVNL VPGDEIAADD EGESESRVLL
GKHRCPICAT AMDAYLLDEK HKLHICGNNP DCVGYEIEEG SYRIKGYEGP SLECDKCGSE
MQLKTGRFGK FFGCTNPACK NTRKLLKSGE AAPPKMDKVD MPELKCEKVD DTYVLRDGAS
GLFLAASQFP KNRETRAPLV LEIVPHKHEI DPKYHFLCDA PQKDPDGRPA VIRYSRKTKE
QYVQSEVDGK PTGWKAFYDG NAWKVEDKR