Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1557 |
Symbol | |
ID | 5869337 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1753698 |
End bp | 1754936 |
Gene Length | 1239 bp |
Protein Length | 412 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641546675 |
Product | nuclease SbcCD, D subunit |
Protein accession | YP_001667798 |
Protein GI | 167032567 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.436101 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.347672 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCTGT TTCATACCTC CGACTGGCAC CTGGGCCAAA GCCTGCACGG CCAGGAACGC GACTTCGAAC ACGCCTGCTT CCTCGACTGG CTGCTCGGCC AGCTGCACCT GCGTCAACCC GATGCGCTGC TGATCGCCGG CGATATCTTC GACACGGTCA ACCCGCCGGT CAAAGCCCAG GAACGCCTCT ACGACTTCAT CGTCCAGGCC CACGAGCAAC AGCCCAAGCT GGACATCGTG ATGATCGCCG GCAACCACGA CTCGGGCTCG CGCATCGAAC TGCCCGCCGC GCTCATGCGG CGCCTGCGCA CCCATGCCCT GGGCCGTGTG CACTGGCTGG ACGAAGGCCA GCTGGATGCC GAGCGGCTGC TGATTCCGCT GACCAACGGC CGTGGCAAGG TCGCTGCCTG GTGCCTGGCC CTGCCTTTCC TGCGCCCGGC TGAAGTGACC GGCCCGCACC TGGGTGACGA CTACCTGCAA GGCATCACCC AGGTGCACCA GCAACTGATC GCCGCCGCGC AAAAAAAGCG CAAGAAAGAC CAGGCGCTGA TCGCCATCAG CCATGCACAC ATGGCCGGTG GATCCGTGTC GGAAGACTCC GAACGCAGCC TGATCATCGG CAATGCCGAG GCGCTGCCGG CCAAGCTGTT CGACAAGGCC ATCAGCTACG TTGCCCTGGG CCACCTGCAC AAACCGCAGA AGGTCAACCG CGAAGAGCGT ATTCGCTACA GCGGCTCGCC GATTCCGCTG TCGTTCGCCG AAATCAACTA CCCACACCAG GTGCTGGAAG TGGAGCTGGA CGGCGCTGGC CTGGTCAGCG TCGAACCGCG CCCGGTACCG CGCGCGGTAG CCCTGCAACG GGTGGGCCCG GCACCGTTGG GCGAGCTGCT GCAGCAACTG GCCGACCTGC CGGTGATCGA CCTGCTCGAA GACCCCAACC GCCAACCCTG GCTGGAAGTG CGGGTTGTTC TGGACGAGCC GCAACCCGAC CTGCGCCAGC AAATCGAAAC CGCGCTGGAG GGTAAGGCGG TACGGTTGAT CCGCATCAGC GCCGAATACG CTGGCCGCAC CAACGCCGAA GATGACGACT TGGCCTTTGT CGAACTGGCC CAGATGACCC CGCAAGATCT GTTCAGCCGT GCCTGGGAGC AAGCCTACGG CAACCCCGCC GACGAGCAGG CGCTGGCCGA CTTCGCCCTG CTGTTGCAGG ACGTGCAGCA GGAAGAGGAA CAGCCATGA
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Protein sequence | MRLFHTSDWH LGQSLHGQER DFEHACFLDW LLGQLHLRQP DALLIAGDIF DTVNPPVKAQ ERLYDFIVQA HEQQPKLDIV MIAGNHDSGS RIELPAALMR RLRTHALGRV HWLDEGQLDA ERLLIPLTNG RGKVAAWCLA LPFLRPAEVT GPHLGDDYLQ GITQVHQQLI AAAQKKRKKD QALIAISHAH MAGGSVSEDS ERSLIIGNAE ALPAKLFDKA ISYVALGHLH KPQKVNREER IRYSGSPIPL SFAEINYPHQ VLEVELDGAG LVSVEPRPVP RAVALQRVGP APLGELLQQL ADLPVIDLLE DPNRQPWLEV RVVLDEPQPD LRQQIETALE GKAVRLIRIS AEYAGRTNAE DDDLAFVELA QMTPQDLFSR AWEQAYGNPA DEQALADFAL LLQDVQQEEE QP
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