| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1481 |
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| Symbol | |
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| ID | 5869250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 1663680 |
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| End bp | 1666940 |
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| Gene Length | 3261 bp |
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| Protein Length | 1086 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641546588 |
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| Product | ribonuclease |
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| Protein accession | YP_001667722 |
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| Protein GI | 167032491 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00984617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAA TGCTGATTAA CGCGACTCAA CCCGAAGAGT TGCGTGTAGC CCTGGTGGAC
GGCCAACGTC TCTACGACCT GGACATCGAG TCCGGTGCGC GCGAGCAGAA AAAGGCCAAC
ATCTATAAAG GCAAGATCAC CCGCATCGAA CCCAGCCTCG AAGCCGCCTT CGTCGACTTC
GGCTCCGAAC GTCACGGCTT CCTGCCGCTG AAAGAAATCT CCCGCGAATA CTTCAAGAAG
GCCCCTGAAG GCCGGGTCAA CATCAAGGAA GTACTCAGCG AAGGCCAGGA AGTCATCGTC
CAGGTCGAGA AGGAAGAGCG CGGCAACAAA GGCGCCGCCC TCACCACCTT CATCAGCCTG
GCTGGCCGCT ACCTGGTTCT GATGCCCAAC AACCCGCGTG CCGGCGGCAT CTCCCGCCGC
ATCGAAGGCG AAGAGCGCAA CGAACTGCGT GAAGCCCTGA ACGGCCTGAC CGTGCCGGGC
GACATGGGCC TGATCGTGCG CACTGCAGGC CTGGGCCGCA GCAGCGAAGA AATGCAGTGG
GACCTCGACT ACCTGCTGCA GCTGTGGACC GCCATCAAGG AAGCGTCCCT GGACCGCGCC
GCGCCATTCC TGATCTACCA GGAAAGCAAC GTCATCATCC GCGCCATCCG CGACTACCTG
CGCCAGGACA TCGGCGAAGT GCTGATCGAC AGCATCGACG CCCAGGAAGA AGCCCTCACC
TTCATCCGCC AGGTGATGCC GCAGTACGCC AGCAAGGTCA AGCTGTACGA AGACAGCGTG
CCGCTGTTCA ACCGTTTCCA GATCGAAAGC CAGATCGAGA CCGCCTTCCA GCGCGTGGTC
GACCTGCCTT CCGGCGGCTC GATCGTGATC GACCCGACCG AAGCCCTGGT GTCCATCGAC
ATCAACTCGG CGCGCGCCAC CAAAGGCAGC GACATCGAAG AAACCGCCTT GCAGACCAAC
CTGGAAGCGG CCGAGGAAAT CGCCCGCCAG CTACGCCTGC GTGACATTGG TGGCCTGATC
GTCATCGACT TCATCGACAT GACCCCGGCG AAAAACCAAC GCGCCGTGGA AGAACGCGTC
CGCGAATGCC TGGAAGCCGA CCGCGCCCGC GTGCAGGTTG GCCGCATCTC CCGCTTCGGC
CTGCTAGAAA TGTCCCGTCA GCGCCTGCGC CCGTCGCTGG GCGAAAGCAG CGGCATCGTC
TGCCCACGCT GCTCCGGCAC CGGCATCATC CGCGATGTCG AGTCGCTGTC GCTGGCCATC
CTGCGCCTGA TCGAAGAAGA AGCCCTGAAG GACCGCACCG CCGAAGTGCG TGCCCAGGTG
CCGATCCCGG TGGCCGCGTT CCTGCTCAAC GAGAAGCGCA ACTCGATCAC CAAGATCGAA
CTGCGCACCC GTGCGCGCAT CATCATCTTG CCAAACGACC ACCTGGAAAC CCCGCACTTC
GAAGTCCAGC GCCTGCGCGA CGACAACCCG GAAGTGCTGA ACAACCAGTC CAGCTACGAG
ATCGCCGCCG CCGAAACCGA AGAAGCGCCG CAGCCGACCG CCACCCGCAC CCTGGTACGT
CAGGAAGCTG CTGTGAAAAC GGCCCCGGCA CGCGCCAATG CGCCGGTACC GGCCGCCGCT
GAAGAGCCGC AGGCTGCCGC ACCGGTCGCC CCTGCCCCGA GCGCTCCGGA GCCAAGCCTG
TTCAAGGGCC TGGTGAAGTC GCTGGTCAGC CTGTTCGCCG GCAAGGACGA GCCTGCCGCC
GCACCGGTGG TTGCCGCCGA AAAACCGGCC GCTGAGCGCA GCCCACGTAA CGAAGAACGC
CGCAACGGCC GCCAGCAAAG CCGCAACCGC AACGGCCGCC GCGACGAGGA GCGCAAGCCG
CGTGAAGAAC GTGCCGAGCG CGCACCCCGC GAAGAACGCC AGCCACGTGA GGAACGCGCA
CCGCGCGAAG AGCGTGCACC ACGTGAAGAG CGCGCCCCAC GCGAAGAACG TGCGCCGCGC
GAAGAGCGTG CACCACGTCA GCCACGCGAA GACCGCCGCA GCAACCGTGG CGAAGAGCGC
GTACGCGAGC TGCGTGAGCC GCTGGATGCT ACCCCACCAG CCGAACGCGA AGAGCGCCAG
CCGCGCGAAG AACGTGCAAC CCGCGAAGAA CGTGCTCCAC GCGAAGAGCG TGCACCGCGT
GAAGAGCGTG CTCCACGTGA AGAGCGCGCA CCTCGCGAAG AGCGTGCCCC TCGTGAAGAA
CGTGCTCCAC GCGAAGAGCG CGCCCCTCGC GAAGAACGTG CTCCACGTGA AGAACGTGCC
CCGCGCCCAC CACGCGAAGA GCGTCAGCCA CGTGCCGCAG AAGAAGCGGC CGAACAGGCT
GCCGAGCTGG CCGAAGAGCA ACTGCCAAAC GATGAGCTGC TGCAGGACGA GCAGGAAGCC
ACCGATGGCG AGCGCCCGCG CCGCCGCTCG CGTGGTCAGC GCCGTCGCAG CAACCGTCGT
GAGCGCCAGC GCAACGCCAA TGGCGAGCTG ATCGACGGCG AAGAAGAAGG CAGCGAAGAG
CAACCACAAC AGCACCAGGC CACCGAGCTG GGTGCCGAAC TGGCCGCCGG CCTGGCAGTG
ACTGCCGCTG TTGCCACCAG CAACATCAGC ACCGACGCCG AAGCCCAGGC CAACCAGCAG
GCCGAGCGCG CCACCGCTGA AGTCGCCACC GCAGCAGAAA CTGACAACAG CGAAGCCGCC
CAACCCGTCG AGCAGGTTGA AAAGGTAGAG CAGGTCGAAG CTGTCGCCAA GGCTGAGGAA
GTGGCCGTAG CACCTGCGGT CGAGCAACCG GTCAGCGAGC CAGTGGCCGT GGTCGAGGCA
ACCGCCGAGC CTGTGGTCGA AATCGCTCCG CAGGCCGCCG TCGAAGCGAC ACCTGTTGTC
GAGCCGGCCG TGGTTGCCGA AACCGTGGCT GCTGAAGCGC CAGTGGAAGC CCCAGCCGTG
GAAGCCGGTG AAATCGAACA GGCCCCGGCC GTTGTCGAAG CGGCTTCGGT TGCCAAGCAA
CCCGCACCGG TAATCGAAGC TCAGCCAGAA GCAGTGGCCG AGCCTGCACC CGTGGTCGTC
GAACCTGCAG CGATCGAAGC CCCAGCCGCA GTAGAGCCGG CCACCGTCAT GCTGGCGAAC
GGCCGCGCGC CGAACGACCC GCGTGAAGTG CGCCGTCGCA AGCGTGAAGC CGAGGCTGCC
GCCAAAGCCG CACAGGAAGC TGCCGCCACC GAGGAGCCAG CCCTGGAAGC CGCCGATGAG
CACAAGCCTC ATCACGGTTG A
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| Protein sequence | MKRMLINATQ PEELRVALVD GQRLYDLDIE SGAREQKKAN IYKGKITRIE PSLEAAFVDF
GSERHGFLPL KEISREYFKK APEGRVNIKE VLSEGQEVIV QVEKEERGNK GAALTTFISL
AGRYLVLMPN NPRAGGISRR IEGEERNELR EALNGLTVPG DMGLIVRTAG LGRSSEEMQW
DLDYLLQLWT AIKEASLDRA APFLIYQESN VIIRAIRDYL RQDIGEVLID SIDAQEEALT
FIRQVMPQYA SKVKLYEDSV PLFNRFQIES QIETAFQRVV DLPSGGSIVI DPTEALVSID
INSARATKGS DIEETALQTN LEAAEEIARQ LRLRDIGGLI VIDFIDMTPA KNQRAVEERV
RECLEADRAR VQVGRISRFG LLEMSRQRLR PSLGESSGIV CPRCSGTGII RDVESLSLAI
LRLIEEEALK DRTAEVRAQV PIPVAAFLLN EKRNSITKIE LRTRARIIIL PNDHLETPHF
EVQRLRDDNP EVLNNQSSYE IAAAETEEAP QPTATRTLVR QEAAVKTAPA RANAPVPAAA
EEPQAAAPVA PAPSAPEPSL FKGLVKSLVS LFAGKDEPAA APVVAAEKPA AERSPRNEER
RNGRQQSRNR NGRRDEERKP REERAERAPR EERQPREERA PREERAPREE RAPREERAPR
EERAPRQPRE DRRSNRGEER VRELREPLDA TPPAEREERQ PREERATREE RAPREERAPR
EERAPREERA PREERAPREE RAPREERAPR EERAPREERA PRPPREERQP RAAEEAAEQA
AELAEEQLPN DELLQDEQEA TDGERPRRRS RGQRRRSNRR ERQRNANGEL IDGEEEGSEE
QPQQHQATEL GAELAAGLAV TAAVATSNIS TDAEAQANQQ AERATAEVAT AAETDNSEAA
QPVEQVEKVE QVEAVAKAEE VAVAPAVEQP VSEPVAVVEA TAEPVVEIAP QAAVEATPVV
EPAVVAETVA AEAPVEAPAV EAGEIEQAPA VVEAASVAKQ PAPVIEAQPE AVAEPAPVVV
EPAAIEAPAA VEPATVMLAN GRAPNDPREV RRRKREAEAA AKAAQEAAAT EEPALEAADE
HKPHHG
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