| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1471 |
|---|
| Symbol | |
|---|
| ID | 5869240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1655307 |
|---|
| End bp | 1656086 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641546578 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001667712 |
|---|
| Protein GI | 167032481 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTGG AACTGCGCAC CAACTGGGTC GCCCTGAACA CCATCGTCTA CCGCGAGGTG
CGGCGCTTCT TGCGCATTTG GCCGCAAACG TTGCTGCCAC CAGCGATCAC CATGGTGCTG
TACTTCGTCA TCTTCGGTAA CCTGATCGGT CGGCAGATCG GCGATATGGG TGGTTTCACC
TACATGCAGT ACATCGTGCC GGGGCTGATC ATGATGTCGG TGATCACCAA CTCCTATGGC
AACGTGGTGT CGAGCTTCTT CGGCAGCAAG TTCCAGCGCT CGATCGAAGA GCTGATGGTG
TCGCCGGTGT CGCCGCACAC CATCTTGGTC GGCTATGTAT TGGGGGGCGT GCTGCGCGGT
CTGGCGGTTG GGGTGATCGT GACCATTTTG TCGATGTTCT TCACCGACCT GCAGGTGCAT
CACCTGGGCG TGACCGTGAT CGTGGTGCTG CTCACTGCCA CCATCTTCTC GCTGCTGGGC
TTCGTCAACG CGGTGTTCGC CCGTAATTTC GACGATATCT CGATCATCCC GACCTTCGTG
CTGACGCCGC TGACCTACCT GGGCGGCGTG TTCTACTCGA TCAACCTGCT GCCGCCGTTC
TGGCAGACCG TGTCGTTGGC CAACCCGGTG CTGCACATGG TCAACTCATT CCGCTACGGC
ATCCTAGGGG TGTCGGATAT CAGCATTGGC ACGGCGATCA CCTTCATGCT GGTGGCCACT
GCGGTGCTCT ACCTGCTGTG CGTGCGCCTG CTGGTCAGCG GTCGCGGCAT GCGTGCATGA
|
|---|
| Protein sequence | MSVELRTNWV ALNTIVYREV RRFLRIWPQT LLPPAITMVL YFVIFGNLIG RQIGDMGGFT
YMQYIVPGLI MMSVITNSYG NVVSSFFGSK FQRSIEELMV SPVSPHTILV GYVLGGVLRG
LAVGVIVTIL SMFFTDLQVH HLGVTVIVVL LTATIFSLLG FVNAVFARNF DDISIIPTFV
LTPLTYLGGV FYSINLLPPF WQTVSLANPV LHMVNSFRYG ILGVSDISIG TAITFMLVAT
AVLYLLCVRL LVSGRGMRA
|
|---|
| |