| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1292 |
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| Symbol | |
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| ID | 5869052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 1438855 |
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| End bp | 1442334 |
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| Gene Length | 3480 bp |
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| Protein Length | 1159 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641546391 |
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| Product | integral membrane sensor hybrid histidine kinase |
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| Protein accession | YP_001667535 |
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| Protein GI | 167032304 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0372313 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.867611 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTTGT CCAGCGGGCT GATCGCCGTG GTCGCCCTGG CCTATATGGC CATCATGTTC
GCCATCGCCT TCTATGGCGA CCGCCGCAGC ACGCCGTTGC CGCCGAAGCT GCGTGCCTGG
GTGTACAGCC TGTCGCTGGC CGTGTACTGC ACCAGCTGGA CCTTCTTCGG CGCCGTCGGC
CAGGCCGCCG AACAGCTCTG GGCGTTCCTG CCCATCTACC TGGGTCCGGT GCTGCTGCTG
ATCTTCGCGC CTTGGGTGCT GCAGAAGATG GTGCTGATCA GCAAACAGCA GAACATCACC
TCGATCGCCG ACTTCATCGC CGCGCGCTAT GGCAAGTCGC AGACACTGGC GGTGGTGGTG
GCGCTGATCT GCCTGATCGG CGTGCTGCCG TACATCGCCT TGCAGCTCAA GGGCATCGTG
CTGGGCGTGA ACCTGCTGAT CGGCGCCAAC GCTGATGCAA CCGGTACCCG CGTGCAGGAC
ACCGCGCTGG TGGTGTCGCT GGTGCTGGCA CTGTTCGCCA TCGTGTTCGG CACCCGCAGC
CTGGACGTGA CCGAACACCA CCGTGGCATG GTCCTGGCGA TTGCCTTCGA ATCGCTGATC
AAGCTGCTGG CCTTCCTCGC CGTCGGTATC TTCGTGGTCT TCAACCTGTA TGACGGTTTC
GACGACCTGT TCAGCCAGGC CCGCCAGTCG ATCCACCTGC AGGACTATTG GCAGGAGACC
ATCAACTGGC CGTCGATGGT GGTGCAAACC GCCGTGGCGA TGATGGCGAT CATCTGCCTG
CCACGGCAAT TCCATGTGAC CGTGGTGGAG AACATCGAAC CCCAGGACAT GCGCCTGGCG
CGCTGGGTCT TCCCAATGTA CCTGGCACTG GCCGCGCTGT TCGTGGTGCC GATTGCCCTG
GCCGGGCAGA TGCTGCTGCC AGGCACGGTG ATTTCCGACT CGTTCGTCAT CAGCCTGCCA
CTGGCCGAGG CGCACCCAAG CCTGGCCCTG CTGGCGTTCA TCGGCGGCGC CTCGGCGGCC
ACCGGCATGG TCATCGTCGA GGCCGTGGCG TTATCGACCA TGGTGTCCAA CGACATGCTG
CTGCCCTGGC TGCTGCGGCG CAACAACGCC GAGCGGCCGT TCGAAGCGTT CCGCCACTGG
ATGCTTTCGG TACGCCGGGT GACCATCGTG GTGATCCTGC TGCTGGCCTA TGTCAGCTAT
CGCCTGCTGG GCTCTACCGC CAGCCTGGCG ACCATCGGCC AGATCGCCTT TGCCGCCGTG
ACTCAGCTCA CCCCAGCCAT GCTCGGCGCG CTGTACTGGA AGCAGGCCAA CCGCCGTGGC
GTGTTCGCCG GCCTGGCCGC TGGCATTTTC CTGTGGTTCT ACACCTTGGT GCTGCCAATC
GCCGCGCACA GCCTGGGCTG GTCGCTGCAG CTGTTCCCAG GGTTGGCGTG GCTGCACGGC
AACCCGCTGA ACCTGCCGAT CAGCCCGCTG ACCCAGGGCG TGGTGCTGTC ACTGGCGGGC
AACTTCACCC TGTTCGCCTG GGTGTCGGTG CTGTCGCGCA CGCGGGTTTC CGAACACTGG
CAGGCCGGCC GCTTCATCGG CCAGCAAACC AGCGCCCGGC CCAGCAGCAA GCCGCTGCTG
GCGGTGCAGA TCGACGACTT GCTGACCCTG GCCTCGCGCT TTGTCGGTGA GGAGCGCGCG
CGGCAGAGCT TCATCCGTTT CGCCTACCGC CAGGGCAAGG GCTTCAACCC CAACCAGAAC
GCCGACGGTG ACTGGATCGA GCACACCGAA CGGTTGCTGG CCGGGGTGCT CGGCACCTCG
TCGACCCGCG CTGTGGTCAA GGCCGCCATC GAAGGCCGCG ACATGCAACT GGAAGACGTG
GTGCGCATCG CCGACGAAGC CAGCGAGGTG CTGCAGTTCA ACCGCGCCTT GCTGCAAGGC
GCCATCGAGA ACATCAACCA GGGCATCAGC GTGGTCGACC AGAACCTGCA TCTGGTGGCC
TGGAACCGTC GCTATCTGGA GCTGTTCAAC TACCCCGACG GGCTGATCAG CGTCGGCCGG
CCTATTGCCG ACATCATCCG CTACAACGCC GAACGTGGCC TGTGCGGTCC GGGCGAGGCC
CAGGTGCATG TGGCGCGTCG TCTGCACTGG ATGCGCCAGG GCCGCGCGCA CTCCTCCGAG
CGGCTGTTCC CCAATGGCCG CGTGATCGAA CTGATCGGCA ACCCGATGCC CGGCGGCGGC
TTTGTCATGA GTTTCACCGA CATCACCCCG TTCCGCGAGG CCGAACAGGC CCTGCGCGAT
GCCAACGAAG GCCTTGAGCA ACGGGTGGCG GAGCGCACCC ACGAGCTGTC ACAACTGAAC
CAGGCACTGT CCGAAGCCAA GAGCCAGGCC GAAGCGGTAA GCAAGTCCAA GACCCGCTTC
CTGGCGGCGG TCAGCCATGA CCTGATGCAG CCACTGAACG CCGCCAGGCT GTTCTCCGCC
GCCTTGTCGC AGCAGGCCGA GGGCATGAAT GAAGAAGCCC AGCAACTGGT GCAGCACATG
GACAGCTCGC TGCGCTCGGC CGAAGAGCTG ATCAGCGACC TGCTGGACAT CTCACGCCTG
GAGAATGGCA AGATCACCCC GGATGCCAAG CCGTTCGCCC TCAACGAACT GTTCGACACC
TTGGGGGCCG AATTCAAATT GCTGGCGGCG GAAAAAGGCC TGGAGTTCCG CCTGCGCGGC
AGCCGCCTGC GGGTGGACAG CGACATGAAA CTGCTGCGCC GGGTGCTGCA GAACTTCCTC
ACCAATGCCC TGCGCTACGG CAAGAGCCCA ATCCTGCTGG GCGCGCGCCG ACAGGGCGAG
CGCCTGTGGC TGGAGGTATG GGACCGCGGC CCGGGCATTG CCGACGACAA GCTGCAGGTG
ATCTTCCAGG AGTTCAAGCG CCTGGACAGC CACCAGACCC GCGCCGAGAA GGGCCTGGGC
CTGGGCCTGG CGATCGCCGA CGGCCTGTGC CGGGTGCTGG GGCACCCGCT GGAAGTGCGC
TCATGGCCGG GCAAGGGCAC GGTGTTCCGC GTCAGCGTGC CGATTGCCCG CCAGGCCGCC
CCGGTGCCAA GTGCCCCGGT GGAGCAACAA GGCGGCCAGC CACTGGCCGG GCTGCAAGTG
CTGTGCGTGG ACAACGAAGA CAGCATCCTG ATTGGCATGA ACAGCCTGCT CAGCCGGTGG
GGTTGCCAGG TATGGACCGC GCGTAACCAA GCTGAATGCG AAGCCCTGCT GGCCAAAGGC
ATGCGCCCGC ACCTGGCGCT GGTGGACTAC CACCTGGATG ACGGTGAAAC CGGCACCGGG
CTGATGGGCT GGCTACGGGC GCGCCTGGGT GAACCGGTGC CCGGTGTGGT GATCAGTGCC
GACGGCAGCA AGGAAACCAT CGCCCTGGTG CATGCATCGG GCCTGGATTA CCTGGCCAAG
CCGGTGAAGC CAGCAGCCCT GCGCGCCATG CTCAATCGCC ATCTGAGCCT GGTTCAGTAA
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| Protein sequence | MSLSSGLIAV VALAYMAIMF AIAFYGDRRS TPLPPKLRAW VYSLSLAVYC TSWTFFGAVG
QAAEQLWAFL PIYLGPVLLL IFAPWVLQKM VLISKQQNIT SIADFIAARY GKSQTLAVVV
ALICLIGVLP YIALQLKGIV LGVNLLIGAN ADATGTRVQD TALVVSLVLA LFAIVFGTRS
LDVTEHHRGM VLAIAFESLI KLLAFLAVGI FVVFNLYDGF DDLFSQARQS IHLQDYWQET
INWPSMVVQT AVAMMAIICL PRQFHVTVVE NIEPQDMRLA RWVFPMYLAL AALFVVPIAL
AGQMLLPGTV ISDSFVISLP LAEAHPSLAL LAFIGGASAA TGMVIVEAVA LSTMVSNDML
LPWLLRRNNA ERPFEAFRHW MLSVRRVTIV VILLLAYVSY RLLGSTASLA TIGQIAFAAV
TQLTPAMLGA LYWKQANRRG VFAGLAAGIF LWFYTLVLPI AAHSLGWSLQ LFPGLAWLHG
NPLNLPISPL TQGVVLSLAG NFTLFAWVSV LSRTRVSEHW QAGRFIGQQT SARPSSKPLL
AVQIDDLLTL ASRFVGEERA RQSFIRFAYR QGKGFNPNQN ADGDWIEHTE RLLAGVLGTS
STRAVVKAAI EGRDMQLEDV VRIADEASEV LQFNRALLQG AIENINQGIS VVDQNLHLVA
WNRRYLELFN YPDGLISVGR PIADIIRYNA ERGLCGPGEA QVHVARRLHW MRQGRAHSSE
RLFPNGRVIE LIGNPMPGGG FVMSFTDITP FREAEQALRD ANEGLEQRVA ERTHELSQLN
QALSEAKSQA EAVSKSKTRF LAAVSHDLMQ PLNAARLFSA ALSQQAEGMN EEAQQLVQHM
DSSLRSAEEL ISDLLDISRL ENGKITPDAK PFALNELFDT LGAEFKLLAA EKGLEFRLRG
SRLRVDSDMK LLRRVLQNFL TNALRYGKSP ILLGARRQGE RLWLEVWDRG PGIADDKLQV
IFQEFKRLDS HQTRAEKGLG LGLAIADGLC RVLGHPLEVR SWPGKGTVFR VSVPIARQAA
PVPSAPVEQQ GGQPLAGLQV LCVDNEDSIL IGMNSLLSRW GCQVWTARNQ AECEALLAKG
MRPHLALVDY HLDDGETGTG LMGWLRARLG EPVPGVVISA DGSKETIALV HASGLDYLAK
PVKPAALRAM LNRHLSLVQ
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