| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1172 |
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| Symbol | ispF |
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| ID | 5868932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1330554 |
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| End bp | 1331027 |
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| Gene Length | 474 bp |
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| Protein Length | 157 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641546272 |
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| Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| Protein accession | YP_001667416 |
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| Protein GI | 167032185 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.505875 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGTATTG GCCATGGCTA CGATGTGCAC CGTTTCTGCG ACGGTGATTT CATTACCTTG
GGCGGGGTGC GTATCCCCCA CAAATACGGC CTGCTGGCCC ATTCCGACGG CGACGTGCTG
CTGCACGCCC TGAGCGATGC CTTGCTGGGC GCCGCGGCGC TGGGCGACAT CGGCAAGCAC
TTCCCCGACA CAGACCCGCA GTTCAAGGGG GCCGACAGCC GAGCGCTGCT GCGCCATGTG
GTCGGCATCG TCAGGGCCAA GGGCTGGAAG GTCGGCAATG TCGACGCCAC CATCGTCGCG
CAGGCGCCGA AGATGGCCCC GCACATCGAG ACCATGCGCC AGCTGATCGC CGAAGACCTG
CAGGTCGAGC TCGACCAGGT CAACGTCAAG GCCACCACGA CTGAAAAGCT GGGCTTCACC
GGCCGCGAGG AGGGGATTGC CGTGCATTCG GTCGCCCTGC TGCTGCCAGC ATGA
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| Protein sequence | MRIGHGYDVH RFCDGDFITL GGVRIPHKYG LLAHSDGDVL LHALSDALLG AAALGDIGKH
FPDTDPQFKG ADSRALLRHV VGIVRAKGWK VGNVDATIVA QAPKMAPHIE TMRQLIAEDL
QVELDQVNVK ATTTEKLGFT GREEGIAVHS VALLLPA
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