| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1097 |
|---|
| Symbol | |
|---|
| ID | 5868856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1245050 |
|---|
| End bp | 1247353 |
|---|
| Gene Length | 2304 bp |
|---|
| Protein Length | 767 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641546196 |
|---|
| Product | CheA signal transduction histidine kinase |
|---|
| Protein accession | YP_001667341 |
|---|
| Protein GI | 167032110 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCAG AGCAAATGCG CGACGCATCG TTGCTCGAAC TGTTCAGCCT GGAGGCCGAG
GCGCAGACCC AGGTGCTCAG TGCCGGCCTG ATGGCATTGG AGCGCAATCC CACCCAGGCC
GACCAGCTCG AGGCCTGCAT GCGCGCCGCC CACTCGCTCA AGGGGGCCGC GCGCATCGTC
GGGGTGGATG CGGGCGTCAG TGTCGCCCAT GTCATGGAGG ATTGCCTGGT AGCGGCCCAG
GAAGGCCGTC TGCGGCTGAC CGCCGAGCAT ATCGATGCAC TATTGCAAGG CACCGACCTG
CTGATGCGCA TCGCCACGCC AGGCGATGCC GGCGCGCAGG CGACCTTGCC GGTGTTTCTT
GCGCAAATGG CCAACCTGCT TGACCCAGGC GCTGCTGCCA TCCCTGCGGC GCCGCTGGTG
GCACCCGTGC TGCCGGAGCC CCCCCCGGCA ATTCCGACGT CGGCACCGTT GGTGGTGCCA
GCCGAACCGC CGGAACCAGA GCCCGAGCCC CAGCCGGCCC TGCGGCGCAA GGCCGGCAAG
CGCGCCGGGG AAGGTGCCGA GCGGGTACTG CGTGTTACCG CCGACCGCCT CAATAGCCTG
CTCGACCTGT CCAGCAAGTC GCTGGTGGAA ACCCAGCGGC TCAAGCCTTA CCTGGCCACC
CTGCAGCGCC TCAAACGCAT GCACGGCCAA GGCATGCAGG CGCTCGATGG CTTGCGTATG
CAGCTGGAAG ACAGTGGCCA GCGCAGCGAG GTGCTCGAAG CCCTGGCGCA AACCCAGCGC
CTGCTGGCGG AAACCCAGCA GATCCTGCAG CAACAGGCTG CGGACCTGGA CGAATTCGGC
TGGCAGGCCA GCCAGCGTGC ACAATTACTG TATGACACGG CTCTGGCTTG CCGAATGCGG
CCGTTTGCCG ACGTGCTGAC TGGGCAGAGC CGCATGGTCC GTGACCTGGG CCGCTCGCTG
GGCAAACCGG TGCGCTTGGT GGTGGAAGGG GAGAAAACCC AGGTCGACCG CGATGTGCTG
GAAAAACTCG AAGCACCGCT GACCCACTTG TTGCGCAATG CCGTCGACCA CGGCATCGAA
CTGCCCGAGC GGCGCCTGCT GGCGGCCAAG CCGGACGAAG GGGAGATCCG CCTGCGGGCG
TCGCACCAGG CCGGCATGCT CAGCCTGGAG CTGATCGACG ATGGCGCCGG CATCGACCTG
GAGCGCTTGC GCAGCAGCAT CGTCGAGCGT GCCCTGTCGC CGGCCGACAC GGTGGCGCGG
ATGAGTGAAG CGGAGCTGCT GACGTTCCTG TTCCTGCCCG GTTTCAGCCT GCGCGACAAG
GTTACCGAAG TGTCCGGGCG CGGCGTGGGG CTGGATGCGG TGCAGCACAT GATCCGCGAG
CTGCGCGGCT CGATCGAGCT GACTCAGGTG GCGGGGCAGG GGTGTCGCTT CCATCTGCAG
GTGCCACTGA CCTTGTCGGT GGTGCGCAGC CTGGTGGTCG AGGTGGGCGG TGAGGCTTAC
GCTTTCCCGC TGGCCCATAT CGAACGCACG CTGGAAGTGA CCGCCGAACA GATCGTGCAG
ATCGAAGGGC GTCAGCACTT CTGGCACGAA GGCCGGCATA TTGGCCTGGT GGCCGCCAGC
CAGTTGCTCA ACCGCCCGGC CGGGCAAAGC GACGAAGCCA GCCTGCGGGT GGTGGTGATC
CGTGAGCGCG AGCAGCTGTA CGGCGTGGCC GTGGAGCGGC TGGTGGGCGA GCGGGTGCTG
GTGGTGATGC CCCTCGACCC ACGGCTGGGC AAGGTACAGG ACATTTCCTC CGGTGCCTTG
CTCGATGATG GCTCGGTGGT GCTGATCGTC GATGTCGAAG ACTTGCTGCG GTCGGTGGAA
AAACTGCTCA GTACCGGTAG CCTGGAGCGC ATCGAGCGCG GCAGCAGCGG TGCCCGTGGG
GTGGCCCGCA AGCGCATCCT GGTGGTCGAC GATTCGCTGA CCGTGCGCGA ACTGCAGCGC
AAGCTGTTGG GTAACCGTGG CTACGACGTG GCAGTGGCAG TCGATGGCAT GGACGGCTGG
AACGCCCTGC GCGGTGAGGA CTTCGATTTG CTGATCACCG ACATCGACAT GCCGCGCATG
GACGGCATCG AGCTGGTCAC CCTGGTGCGT CGCGACCAGC GGCTGCAGTC GTTGCCGGTG
ATGGTGGTGT CCTACAAAGA CCGTGAGGAA GACCGACGGC GTGGTCTGGA TGCTGGCGCG
GACTACTATT TGGCGAAAGC CAGTTTCCAC GACGATGCGT TGCTGGATGC TGTAGTCGAG
CTGATCGGAG GTGCTCAGGG ATGA
|
|---|
| Protein sequence | MTPEQMRDAS LLELFSLEAE AQTQVLSAGL MALERNPTQA DQLEACMRAA HSLKGAARIV
GVDAGVSVAH VMEDCLVAAQ EGRLRLTAEH IDALLQGTDL LMRIATPGDA GAQATLPVFL
AQMANLLDPG AAAIPAAPLV APVLPEPPPA IPTSAPLVVP AEPPEPEPEP QPALRRKAGK
RAGEGAERVL RVTADRLNSL LDLSSKSLVE TQRLKPYLAT LQRLKRMHGQ GMQALDGLRM
QLEDSGQRSE VLEALAQTQR LLAETQQILQ QQAADLDEFG WQASQRAQLL YDTALACRMR
PFADVLTGQS RMVRDLGRSL GKPVRLVVEG EKTQVDRDVL EKLEAPLTHL LRNAVDHGIE
LPERRLLAAK PDEGEIRLRA SHQAGMLSLE LIDDGAGIDL ERLRSSIVER ALSPADTVAR
MSEAELLTFL FLPGFSLRDK VTEVSGRGVG LDAVQHMIRE LRGSIELTQV AGQGCRFHLQ
VPLTLSVVRS LVVEVGGEAY AFPLAHIERT LEVTAEQIVQ IEGRQHFWHE GRHIGLVAAS
QLLNRPAGQS DEASLRVVVI REREQLYGVA VERLVGERVL VVMPLDPRLG KVQDISSGAL
LDDGSVVLIV DVEDLLRSVE KLLSTGSLER IERGSSGARG VARKRILVVD DSLTVRELQR
KLLGNRGYDV AVAVDGMDGW NALRGEDFDL LITDIDMPRM DGIELVTLVR RDQRLQSLPV
MVVSYKDREE DRRRGLDAGA DYYLAKASFH DDALLDAVVE LIGGAQG
|
|---|
| |