| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1045 |
|---|
| Symbol | |
|---|
| ID | 5868805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1193801 |
|---|
| End bp | 1195003 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641546146 |
|---|
| Product | general secretion pathway protein F |
|---|
| Protein accession | YP_001667291 |
|---|
| Protein GI | 167032060 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACCT ATCGCTACCA GGCCGTGGAC CTCGCGGGCA AATCGCACAA GGCCAGCCTG
CAGGCTGACA ATGAGCGCCA CGCCCGCCAG CTGTTGCGCG AGCAGGGCCT GTTTGCCCGC
CAGTTGCAGC GCCACGAAGC CGGTGTCCAG CGACCCCGGC GCCAGCGGCT TAGCCGCGCC
CAGCTGTGTG AATTGACCCG TCAACTGGCC ACCTTGATCG GGGCCGGCAT CCCCTTGGTC
GATGCCCTGG CCACCCTGGA ACGGCAACTG CGCCAGCCCG CCTTGCACAG TGTGCTGGTG
GCCCTGCGCG GCTCGCTTGC CGAAGGCCTG GGCCTGGCTC GCAGCCTGGC TCGGCAGGGC
GCACCTTTCA CTGGCCTGTA CTGCGCGCTG GTCGAGGCTG GCGAACGTTC CGGGCGCCTG
GCCCAGGTGC TGACCCGCTT GGCCGATCAT TTGGAACAGG TGCAACGGCA GCAGCACAAG
GCCCGCACTG CGCTGATCTA CCCCACGGTA CTGATGGGGG TGTCGCTTGC CGTGGTCATC
GGCCTGATGA CATTCGTCGT GCCCAAACTC ACCGAACAAT TTGCCCATGC CGGGCAGAGC
CTGCCACTGA TCACCTCGTT GCTGATTGGC CTGAGCCAGG GCTTGGTGCT GGCAGGGCCG
TGGATGGTAG GGCTGGCGCT GATGCTCGCC GTGCTGGGTG GCTGGTTGCT GCGCAAGCCG
CATTGGTGTC TGCGCCGCGA CCAACTGCTG TTGCGCCTGC CGCGCATCGG CGGCCTGGTG
CAGGTGCTGG AAAGCGCACG CCTGGCACGC AGCCTGGCGA TTCTCAGTGG CAGCGGCGTG
GCCCTGCTCG AAGCCTTGCA CGTGGCCACC GACACCATCG GCAACCGGCG TATCCGCCTG
GCCATGGAGC AGGTACGCCA GCAAGTGCAG GGCGGCACCA GCCTGCACCG TGCGCTGGAT
GCCTGCCAGC AATTCCCGCC GCTGCTGGTG AACATGGTCG GCAGCGGCGA GGCCAGCGGC
ACCCTGGCCG ACATGCTCGA GCGTGTGGCC GACGACCAGG AGCGCGGCTT TGCCCGCCAG
GTGGATACCG CCATGGCGCT GTTCGAACCC CTGATGATTC TGGTGATGGG CGCCGTGGTG
CTGTTCATCG TGCTGGCGGT GCTGCTGCCG ATCATGCAAC TCAACCAGGG CCTGCAACTG
TGA
|
|---|
| Protein sequence | MPTYRYQAVD LAGKSHKASL QADNERHARQ LLREQGLFAR QLQRHEAGVQ RPRRQRLSRA
QLCELTRQLA TLIGAGIPLV DALATLERQL RQPALHSVLV ALRGSLAEGL GLARSLARQG
APFTGLYCAL VEAGERSGRL AQVLTRLADH LEQVQRQQHK ARTALIYPTV LMGVSLAVVI
GLMTFVVPKL TEQFAHAGQS LPLITSLLIG LSQGLVLAGP WMVGLALMLA VLGGWLLRKP
HWCLRRDQLL LRLPRIGGLV QVLESARLAR SLAILSGSGV ALLEALHVAT DTIGNRRIRL
AMEQVRQQVQ GGTSLHRALD ACQQFPPLLV NMVGSGEASG TLADMLERVA DDQERGFARQ
VDTAMALFEP LMILVMGAVV LFIVLAVLLP IMQLNQGLQL
|
|---|
| |