| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1043 |
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| Symbol | |
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| ID | 5868803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1190595 |
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| End bp | 1192349 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641546144 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001667289 |
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| Protein GI | 167032058 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.795547 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGTTA GATACTGCGT GGCGGCCGCG CTGAGCGTGG CCTTGTCCAT GGCCTGCGCT
GAAGAACCGG TGTTCGATGA CAACGGCACG CCGATGTACG AAGTGAACTT CGTCGATACC
GAGCTTGGCG AGTTCATCGA CAGTGTGTCG CGCATCACCG GCACCACCTT CATCGTCGAC
CCCAGGGTCA AGGGCAAGGT CACCGTGCGC ACCGTCGACC TGCACGACGC CGATGCCATC
TATGACATCT TCCTGGCCCA ACTGCGCGCC CAGGGTTATG CCACCGTCGA CCTGCCCAAC
GGCAGCGTGA AGATCGTCCC CGACCAGGCC GCACGTCTGG AGCCGGTGCC GGTGGAGGCG
GGCGGGCAGC AGGGCGAGGG CAGCGACAGC GTGGCCACTC GGGTATTCAA CGTGCGTAAC
GCCGCCAGTG AACAAGTCCT GGGCATTCTC AAGCCGCTGA TCGACCCACG GGTTGGGGTG
ATTACACCGT ATCCGGCGGC GCATCAGCTG GTGGTGACCG ACTGGCGCAG CAACCTGGAA
CGCATCGCCA GCCTGCTGCG CCAGCTCGAC CGCCCAGAGG AGGCACAAGG CAGCGGCAGT
ACCCAGGTGA TCTACCTGCG CCATGCCAAT GCCGGTGAAG TGGTCAAGGT GCTGCGCGGG
CTCAGCCAGG AAGGTGCGGT GCCAGCTGAA GGGCCTGGAG AAGGAGAAAG CAAGGACAGG
CCGGTGATGG TCGCCTCCGC AGGCCCAAGT ATCCGCTTGG AGTACGAAGA GGGCACCAAC
GCCGTGGTCA TGGTCGGCCC CGACAGCGAG CTGGCGGCGT ATCGTGCCAT TGTCGAGCAA
CTGGACATTC GTCGCGCCCA GGTGGTGGTC GAGGCGATCA TCGCCGAGGT ATCGGACAGC
AGCGCTCAGG AGCTGGGTGT GCAATGGCTG TTCGCCGACG AAAAGTTCGG TGCCGGTATC
GTCAACTTCG GCAGCAATGG CGTGAATATC GCCAACATCG CCGGGGCCGC CGCCAGTGGT
GACAACGAGG CCCTCGGCGA CTTGCTGTCC ACCACGGCGG GTGCCACGGC GGGCATCGGC
CATTTCGGCG GCGGCTTCAA CTTCGCCATG CTGGTCAACG CGCTGAAGGG CAAAAGCGGC
TTCAACCTGC TGTCCACGCC CACCTTGCTG ACCCTGGACA ACGCCGAAGC GTCGATCCTG
GTCGGCCAGG AAGTGCCTTT CGTCACCGGC TCGGTGACGC AGAACAACGC CAACCCGTAC
CAGACCATCG AACGCAAGGA AGTCGGGGTG AAGCTGCGCA TCAAGCCGCA GATCAACATC
GACAACAGCG TGCGCCTGGA CATCGTCCAG GAAGTGTCGT CGATTGCCGA CTCCAGTGCA
GCCAGTGACG TGATCACCAA CAAGCGCGAG ATCAAGACCA AGGTCATGGT CGAGGACAAC
GGCCTGGTGA TTCTCGGCGG CCTGATCAGC GACGAACTGA GCACCAGCAA CCAGCGTGTG
CCGCTGCTTG GCGACATCCC TTATCTGGGC CGGTTGTTCC GCTCCGATGC CAGCAAGAAC
ACCAAGCAGA ACCTGATGGT GTTCATCCGC CCGCGCATCC TGCGCGATGG GCCCAGCCTG
GCGGGGCTCA GCGAAGACAA ATACCGCACC TTGCAGCAGA CCACACCGCT GCAATTGCCA
GACCTTGCAC AGGGCACGCC ACTGTTGCAG GTATTTCCCT CCAGCCGCGC GCGCCTGGAA
GGCGGTGACT GGTGA
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| Protein sequence | MPVRYCVAAA LSVALSMACA EEPVFDDNGT PMYEVNFVDT ELGEFIDSVS RITGTTFIVD
PRVKGKVTVR TVDLHDADAI YDIFLAQLRA QGYATVDLPN GSVKIVPDQA ARLEPVPVEA
GGQQGEGSDS VATRVFNVRN AASEQVLGIL KPLIDPRVGV ITPYPAAHQL VVTDWRSNLE
RIASLLRQLD RPEEAQGSGS TQVIYLRHAN AGEVVKVLRG LSQEGAVPAE GPGEGESKDR
PVMVASAGPS IRLEYEEGTN AVVMVGPDSE LAAYRAIVEQ LDIRRAQVVV EAIIAEVSDS
SAQELGVQWL FADEKFGAGI VNFGSNGVNI ANIAGAAASG DNEALGDLLS TTAGATAGIG
HFGGGFNFAM LVNALKGKSG FNLLSTPTLL TLDNAEASIL VGQEVPFVTG SVTQNNANPY
QTIERKEVGV KLRIKPQINI DNSVRLDIVQ EVSSIADSSA ASDVITNKRE IKTKVMVEDN
GLVILGGLIS DELSTSNQRV PLLGDIPYLG RLFRSDASKN TKQNLMVFIR PRILRDGPSL
AGLSEDKYRT LQQTTPLQLP DLAQGTPLLQ VFPSSRARLE GGDW
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