| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1017 |
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| Symbol | |
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| ID | 5868777 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1159478 |
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| End bp | 1160821 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641546118 |
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| Product | carbohydrate-selective porin OprB |
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| Protein accession | YP_001667263 |
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| Protein GI | 167032032 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.134295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACAGC GCAAACGCAT CAGCACATTG GGCTCGCTGG CCTTGCTCGC CGTTGTCGGC
AGCGGCGGCG TGCAGGCTGC CGAGGCTTTT TCCAGTGAGT CGAAATGGAT GACTGGCGAC
TGGGGCGGCA CCCGTACCGA GCTGCTGGAA AAGGGCTACG ACTTCACCCT CGACTATGTC
GGCGAGGTAG CCGGCAACCT GCACGGCGGC TACAACGACG ACAAGACCGC CCGCTACAGC
GACCAGTTCG CCCTCGGCGC GCACCTGGAC TTGCAGAAAA TACTTGGCTG GCACGATGCC
GAGTTCAAGC TGGCGATCAC CGAGCGCAGC GGCCGCAACC TGTCCAATGA CCGCATCAGC
GACCCACGCG CTGGGCAGTT CAGCTCGGTG CAGGAGGTGT GGGGTCGTGG TCAGACCTGG
CGCTTGACGC AGATGTGGGT CAAGCAGAAG TACTTCGACG GCGCACTGGA CGTCAAATTC
GGCCGCTTCG GCGAGGGCGA GGACTTCAAC AGCTTCCCTT GCGATTTCCA GAACCTGGCC
TTCTGTGGCT CGCAGGTGGG CAACTGGGTC GGCGGCATCT GGTACAACTG GCCGGTCAGC
CAGTGGGCGC TGCGGGTGAA ATACAACATC ACCCCGGAAT TCTTCGTGCA GGTCGGCGCT
TTCGAGCAGA ACCCTTCCAA CCTGGAAACC GGCAACGGCT TCAAGCTCAG CGGCAGTGGT
ACCAAGGGGG CGATCTTGCC GGTGGAAGCG GTGTGGTCAC CCAAGGTCAA CGGCCTGCCT
GGTGAGTACC GCCTGGGCTA CTACTACAGC ACGGCCAAGG CCGACGATGT GTTTGACGAC
GTCAACGGCA ACCCGCAGGC GCTCAGCGGC GAGGCCTTCA AGTCGCATTC CAGCAAGCAC
GGCTGGTGGG TGGTGGCGCA GCAGCAAGTC ACCGCTCACG GTGGCGACGT CAACCGTGGC
CTGAGCCTGT TCGCCAACTT CACCGTGCAC GACAAGGCCA CCAACGTGGT CGACAACTAC
CAGCAGGTGG GGCTGGTCTA CAAAGGCGCC TTCGACGCCC GGCCCAAGGA TGACATCGGC
TTTGGCGTGG CGCGTATTCA TGTAAATGAC GACGTGAAAA AGCGCGCTGA ACTGCTGAAC
GCCCAGAGTG GCATCAACGA TTACGACAAC CCAGGCTTCG TGCCGCTGCA GCGCACCGAG
TACAACGCCG AGCTCTATTA CGGCTTCCAC GTCACCAACT GGCTCACCGT GCGGCCCAAC
CTGCAGTACA TCAAAAGCCC CGGCGGGGTA GACCAGGTGG ACAACGCGCT GGTCGCAGGT
TTGAAGATTC AGTCGTCATT CTGA
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| Protein sequence | MEQRKRISTL GSLALLAVVG SGGVQAAEAF SSESKWMTGD WGGTRTELLE KGYDFTLDYV
GEVAGNLHGG YNDDKTARYS DQFALGAHLD LQKILGWHDA EFKLAITERS GRNLSNDRIS
DPRAGQFSSV QEVWGRGQTW RLTQMWVKQK YFDGALDVKF GRFGEGEDFN SFPCDFQNLA
FCGSQVGNWV GGIWYNWPVS QWALRVKYNI TPEFFVQVGA FEQNPSNLET GNGFKLSGSG
TKGAILPVEA VWSPKVNGLP GEYRLGYYYS TAKADDVFDD VNGNPQALSG EAFKSHSSKH
GWWVVAQQQV TAHGGDVNRG LSLFANFTVH DKATNVVDNY QQVGLVYKGA FDARPKDDIG
FGVARIHVND DVKKRAELLN AQSGINDYDN PGFVPLQRTE YNAELYYGFH VTNWLTVRPN
LQYIKSPGGV DQVDNALVAG LKIQSSF
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