| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0892 |
|---|
| Symbol | ndk |
|---|
| ID | 5868652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1022385 |
|---|
| End bp | 1022810 |
|---|
| Gene Length | 426 bp |
|---|
| Protein Length | 141 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641545993 |
|---|
| Product | nucleoside diphosphate kinase |
|---|
| Protein accession | YP_001667138 |
|---|
| Protein GI | 167031907 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0105] Nucleoside diphosphate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0000000198835 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTTC AACGTACTTT CTCGATCATC AAGCCTGACG CCGTTGCCAA AAACGTCATC
GGCAAGATCA CCACTCGCTT CGAAGAAGCT GGCCTGAAAA TCGTTGCCTC GAAAATCAAG
CAACTGTCCA AAGCCGAAGC CGAAGGCTTC TACGCTGAGC ACAGCGCTCG CGGCTTCTTC
GGTGACCTGG TTGCCTTCAT GACTTCCGGT CCAGTTGTTG TTCAGGTTCT GGAAGGCGAA
AACGCCATCG CTCTGAACCG TGAGCTGATG GGCGCTACCA ACCCTAAAGA AGCTGCTGCC
GGCACCATCC GTGCTGACTT CGCCGAGTCG ATCGACGCCA ACGCCGTTCA TGGTTCGGAC
TCCGAAGCTG CCGCTGCTCG CGAAATCGCT TACTTCTTCG CTGCTACCGA GGTAACCACT
CGCTAA
|
|---|
| Protein sequence | MAVQRTFSII KPDAVAKNVI GKITTRFEEA GLKIVASKIK QLSKAEAEGF YAEHSARGFF
GDLVAFMTSG PVVVQVLEGE NAIALNRELM GATNPKEAAA GTIRADFAES IDANAVHGSD
SEAAAAREIA YFFAATEVTT R
|
|---|
| |