| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0880 |
|---|
| Symbol | |
|---|
| ID | 5868640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1013439 |
|---|
| End bp | 1013969 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641545981 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001667126 |
|---|
| Protein GI | 167031895 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3134] Predicted outer membrane lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0587539 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGTGG GTGCGGTACT GGGTGCTGTC GGTGTGACTG CCGGAGGTGC TGTCGCGACC
TACAGCTTGG TCAACAAGGG GCCTGAGTAT GCGCAGGTTA CCGACGTGCA GCCGATCAAA
CAGCAGGTAA AAACCCCGCG CGAGGTCTGC AAGGACGTCG CCGTCACACG CCAGGCGCCG
GTCAAGGACC AGCACCAGAT TGCAGGTACC GTGGTGGGTG CCATTGCCGG CGGCCTGCTG
GGTAACCAGA TTGGTGGCGG TACCGGCAAG AAAATCGCCA CCGTGGCTGG TGCGGTAGGT
GGTGGTTATG CCGGTAACAA GGTGCAGGAG GGCATGCAGG AGCGTGACAC CTACACCACC
ACGCAAACCC GCTGCAACAC GGTCAACGAC ATCAGTGAGA AGGTGGTGGG CTACAACGTC
ACCTACTCCA TTGGTGATCA GGTAGGCAAG GTGAAGATGG ACCGTGAGCC GGGCTCGACC
ATTCCGCTGG ACAAGAATGG CAAGTTGATC CTGAGCGAAG CGGGTCAGTA A
|
|---|
| Protein sequence | MLVGAVLGAV GVTAGGAVAT YSLVNKGPEY AQVTDVQPIK QQVKTPREVC KDVAVTRQAP
VKDQHQIAGT VVGAIAGGLL GNQIGGGTGK KIATVAGAVG GGYAGNKVQE GMQERDTYTT
TQTRCNTVND ISEKVVGYNV TYSIGDQVGK VKMDREPGST IPLDKNGKLI LSEAGQ
|
|---|
| |