Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0879 |
Symbol | secF |
ID | 5868639 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1012400 |
End bp | 1013308 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641545980 |
Product | preprotein translocase subunit SecF |
Protein accession | YP_001667125 |
Protein GI | 167031894 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0341] Preprotein translocase subunit SecF |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
Num covering plasmid clones | 51 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.0954141 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACCA TCAATTTCAT GGGCGTACGC AATGTCGCGT TCGCCATTAC CGTGCTCCTC ACCGTGCTGG CGCTGTTCAG CTGGTGGCAG AAAGGCCTGA ACTTCGGCCT GGACTTCACC GGTGGTACGC TGATCGAGCT GACCTACGAG CGCCCGGCCG ACCTCAAGGC GGTGCGGGCC GAGCTGGTCG ATTCGGGCTT CCACGAGGCG GTGGTGCAGA GCTTTGGCGC TACCACCGAC CTGCTGGTGC GTATGCCGGG CGATGACCCA CAGCTGGGCA ACAAGGTAGC TGCCGCGCTG CAGAAGGCTG GCGGCGACAA CCCGGCAACC CTCAAGCGTG TCGAGTTCGT CGGCCCGCAG GTGGGTGAAG AGCTGCGCGA CCAGGGTGGC ATGGGCATGC TCCTGGCCCT GGGCGGCATC CTTATCTACC TGGCCTTCCG CTTCCAGTGG AAGTTCGCCG TGGGTGCGAT CATCTCGCTG ATCCATGACG TGGTGGTGAC CCTGGGTATC CTGTCGTTCT TCCAGATCAC CTTCGACCTG ACGGTGCTGG CAGCGGTGCT GGCGATCATC GGCTACTCGT TGAACGACAC CATCGTCGTG TTCGACCGTG TGCGTGAGAA CTTCCGCGTC ATGCGCAAGG CCTCGCTGAT CGAGAACATC AACGTTTCCA CCACCCAGAC CCTGCTGCGT ACCATCGCTA CCTCGGTTTC GACCTTGTTG GCCATTGCCG CGCTGCTGTT CTTTGGTGGT GACAACCTGT TCGGCTTCTC GCTGGCCTTG TTCATCGGCG TCATGGCCGG TACCTACTCG TCGATCTACA TCGCCAACGT GGTACTGATC TGGCTGAACC TGAACAGCGA AGACCTCATC CCGCCGACCA AGGCAGAGGG CGTGGACGAG CGTCCATAA
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Protein sequence | MKTINFMGVR NVAFAITVLL TVLALFSWWQ KGLNFGLDFT GGTLIELTYE RPADLKAVRA ELVDSGFHEA VVQSFGATTD LLVRMPGDDP QLGNKVAAAL QKAGGDNPAT LKRVEFVGPQ VGEELRDQGG MGMLLALGGI LIYLAFRFQW KFAVGAIISL IHDVVVTLGI LSFFQITFDL TVLAAVLAII GYSLNDTIVV FDRVRENFRV MRKASLIENI NVSTTQTLLR TIATSVSTLL AIAALLFFGG DNLFGFSLAL FIGVMAGTYS SIYIANVVLI WLNLNSEDLI PPTKAEGVDE RP
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