Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0780 |
Symbol | |
ID | 5868539 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 887948 |
End bp | 889375 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641545880 |
Product | deoxyribodipyrimidine photo-lyase |
Protein accession | YP_001667026 |
Protein GI | 167031795 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.431367 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACCTGA CCTGGCTGCG CAGCGATCTG CGCATCGATG ACAACACTGC ACTCAGCGCC GCCACCGAGC GCGGGCCGAC CATCGCCCTG TGGCTGGTCA GCCCAGGGCA ATGGCAAGCC CATGACGACG CCGCCTGCAA GGTCGACTTC TGGCTGCGCA ACTTGCGCGC CCTGCGCCAA TCGCTCGAAG GCCTGAATAT CCCCCTGCTG ATCCGCAAGA TCGACACCTG GGACCAGGCC CCCCAGGCGG TGCTCGATGT ATGCCGCCAA CACCAGGTGC AAAGCGTGCA CTGGAACGAA GAGTACGGCA TCAACGAACA GCAACGCGAC GATGCGACCC GCGCGCTGCT GGAGAAGTCG TCCATCCAGG CCTGCAGCCA CCTCGACCAG CTGTTGTTCC GCCCTGGCAC CATCCTTACC CGCAGCGGCG ACTACTTCCA GGTCTTCAGC CAGTTCAAGA AGACCTGCCT GGAACACCTG CACCGCAGCC TGCCTGCCCT GGCCCGCCGG GTGGAGCGTC AGGCACCGCT GCAAATCCAA AGTGACCCGA TTCCACAACA CGTAGACGGT TTTGAAACCC CCACGCGCGC CTTGCGTGAG CATTGGCCGG CGGGTGAGGC CGAAGCGCAG GCGCGCCTGT CCCGCTTTCT GGACGAAACC ATCGACGAAT ACCAACAATT GCGTGACCTG CCTGCCAAGC ACGGCACCAG CCAACTCTCC ACCTACCTGG CCGCTGGCGT GATCTCGCCG CGCCAATGCC TGCACGGCGC ACTGGCCAGC AACCGGGGCG AGTTCGACAG CGGCAGTACG GGCGTGCAGA CCTGGATCAA CGAGCTGCTC TGGCGCGAGT TCTACAAGCA CATCCTGAAC GGTTACCCAC AGGTCTCGCG CCACCGCGCC TTTCGCGCCC ATACCGAAGC CCTGCCCTGG CGTGACGCCC CGGCGGACCT GGAAGCCTGG AAACAGGGCC GCACCGGGTT CCCGATCATC GATGCGGCCA TGCGCCAACT GCTGCACACC GGATGGATGC ACAACCGCCT GCGCATGGTC GTGGCCATGT TCCTCAGCAA GAACCTGCTG ATCGACTGGC GCAAGGGCGA GCGACACTTC ATGCGCCACC TGATAGACGG CGACCTGGCC GCCAACAACG GCGGCTGGCA GTGGAGCGCG TCCACCGGCA CCGACGCTGT GCCTTATTTC CGCATTTTCA ACCCAGTTTC TCAGTCTCAG CGTTTCGACC CACAGGGGCG CTTCATCCGG CACTGGCTGC CCGAATTACG CGACATGGAT GAGAAAACTA TCCATGAGCC GATGAAATCT GATGATCTTT TTGCTAATAA TTCGTATCAC CGTCCAATGG TCATTCTCGG CAGCAGTCGC CAGCGTGCAC TGGAAGCCTT CAAAGGCCTA CCACGTCGGC AGGATTAG
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Protein sequence | MHLTWLRSDL RIDDNTALSA ATERGPTIAL WLVSPGQWQA HDDAACKVDF WLRNLRALRQ SLEGLNIPLL IRKIDTWDQA PQAVLDVCRQ HQVQSVHWNE EYGINEQQRD DATRALLEKS SIQACSHLDQ LLFRPGTILT RSGDYFQVFS QFKKTCLEHL HRSLPALARR VERQAPLQIQ SDPIPQHVDG FETPTRALRE HWPAGEAEAQ ARLSRFLDET IDEYQQLRDL PAKHGTSQLS TYLAAGVISP RQCLHGALAS NRGEFDSGST GVQTWINELL WREFYKHILN GYPQVSRHRA FRAHTEALPW RDAPADLEAW KQGRTGFPII DAAMRQLLHT GWMHNRLRMV VAMFLSKNLL IDWRKGERHF MRHLIDGDLA ANNGGWQWSA STGTDAVPYF RIFNPVSQSQ RFDPQGRFIR HWLPELRDMD EKTIHEPMKS DDLFANNSYH RPMVILGSSR QRALEAFKGL PRRQD
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