| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0704 |
|---|
| Symbol | |
|---|
| ID | 5868461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 802912 |
|---|
| End bp | 806742 |
|---|
| Gene Length | 3831 bp |
|---|
| Protein Length | 1276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641545802 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_001666950 |
|---|
| Protein GI | 167031719 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.116377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACCAACC TTACTCATCC GTCGTCATTG CGTACCGCGC AACAAGCGCC CGCCGTTACC
CTGCGCGGGT CGATCAAGGG TGCGCTGGCA CTGTTGGCCC TGATTCTGCT GGGCCTGCTG
CTGTGGCAAC TATTCGCCCA GTTCAACCAT ACCCAGGCCG ACCTGCGCAA ACAGAGCCTG
GACGCCACCG CGGAACTGGC CGACCACCTG AGCCTGAACA TGGCGTTCAA GGCGCAGCAG
GCAGTGAATG TGGTGCAGCC CTATGTCAAT GCACCGACAC CCGCTGCCCT GCCGAGCCTG
GTGGACACCC TGCGCGAGCG CCTGCCTGCC TTGCAAAGCG TGGCCTGGCT GGACAGTGCC
GGGCAACTGC GCGTCGACAG CCTGGCCGGC AGCCCGGACC GCCAGTTGCT TGACGAACTG
CTGACACTGA ACCAGGGGCG CCCGTACTTC TTCACCAATT CGGCCGACAA CCGCACCCTG
TATCTGTTGC TGCGCCAGGC CGCCGAACAG GACCGTGGCT ACTGGTTGCT GCGCCTTTCA
CCGGACTACT ACCGCGAGCT CACCCTCTAC CTCGATGGTG GCGGCCACCC GCTGTGGCTG
CTGGAGAACA GCCGCAGTGG CGAGGTGCTG CAGAGCCACG CCCCAACCGA TACCAGCAAC
GCGCCGCTGC AAAGCGTGAT GCTGGCCTTC ATCGACAACA GTACCTGGCA GTTGCGCGGC
CTGTTCGACG CCGAGCTGGC CCAGCAAAAG TTATTGCCGG CGCTGATCGG CAAATGCCTG
CTGGTGCTGT TTTGCGCCCT GCTGCCGGTG CTGGCGCTGA TCAACATGCG CCGCCGCCAG
CGCGCCCTGC AGGAAGACCG CCGGCGCTAT CAGGAAATTT TCGAAGGCAC CGGCGTGGCC
CTGTGCGTGC TCGATTTGTC CAGCCTGCCC AGCCAGCTCG ACCGCTACCA CCTGCGCAAC
CGCGCTGCGC TCAAGCACAG CCTGGCGCTG GACCCGAACC TGCGTCGCTC GCTACTGCTG
GAGCTGAAGA TCACCGAGGT CAACCAGGTG GCGCGCCAAC TGCTGAACAT CGAGTGCCAC
GAAGGCGCAT GGCAGCGGCT GATCGACGGC ACCGGCGATG GCCGCGACAG CGTCGGCATG
CAGCTGATCG ACGCACTGAT CGAGCAACGC CAGCTGCTTG AGCTGGAAGT GCGCCTGCCG
GCACCGCTGG GCGGCGAGCT GCACCTGTGG TTGATGGCGC GCCTGCCGCA GCAGCGCCGC
GACTACCAGG CAGTGATCCT CAGCATCAGC GACATCACCA GCCGCAAACA GGTCGAGCTG
TCGCTGCTGG AGCGCGAAGG CTTCTGGTCG GACGTGGTGC GCACCGTACC CGACCAGTTG
TACGTGCAGG ATGTGCTGAG CCAGCGGATG ATCTTCAGCA ACCGTCACCT CGGCCAGACC
CTGGGCTACG ACCGTACCGA GCTGGCACAG ATGGGCGACC GCTTCTGGGA GCTGCTGCTG
CACCCCGAGG ATGCCGCGCA CTACCAGGCC CTGCGCCAGC AACAGCGCGA CAGCGGCCAT
GACCAACCGC TGCAATGCCA GTTGCGCTTC CGCCACCGCG ACGGCGGCTG GCGCTGCTAC
GACATTCGCG AGCAGGTGCT GACCCGCGAT GCCGAAGGCC TGGTGACGCG CATCATCGGC
GTGGGCAAGG ATGTGACCGT GCAGATCGAG GCCAGCCAGT CGCTACGCGA CAGCGAGCAG
CGCTACCGCA TGCTCGCCGA AAGCATCAGC GACGTGATCT TCTCCACCGA CAGCCTGCTC
AAGCTCAACT ATGTAAGCCC CTCGGTGCAG AGCGTGCTGG GCTACCAGGC CGACTGGATT
TTCGCCAACG GCTGGCAGTC GATCATCGCC AACCCGGCCC AGCTCACCGG CATCTACAGC
CTGATGGAGC GCGTCAGCAA AGCCATGGGG GAGCCATCGC AACTGGCGCA ACTGCGCAGC
CAGCTACCGA CCCAGCTGTT CCTGTTCGAC TGTCTGCGTG CCGATGGCCG CAAGATCCCC
ATCGAGCTGC GTCTGGTGCT GGTGTGGGAC GATGACCAGC GCTTTGAGGG CGTGCTTGGG
GTGGGCCGCG ACATCAGCCA GCAACGCCGT GCCGAAAAAG ACCTACGCAT GGCCGCAACG
GTATTCGAAC ACTCCACGTC GGCGATCCTC ATCACCGACC CGGCCGGCTA CATCGTCCAG
GCCAACGAGG CGTTCAGCCG CGTCAGTGGG TACGCCGTCA GTGAAGTGCT CGACCAGTTG
CCGGGCATGC TCACCGTCGA CGAACAGCAG GAGGGCCACC TGCGCTATGT GGTCAAGCAA
CTGCACCAGC GCGGCAGTTG GGAAGGCGAG GTGTGGCTCA AGCGCCGTGA CGGCGACCAC
TACCCGGCCT GGGTGGGCAT CACGGCGGTA CTGGACGACG AAGGCGACCT GGCCAGCTAC
GTGTGCTTCT TCACCGACAT CAGCGAGCGC AAAGCCAGCG AACAGCGCAT CCACCGCCTG
GCCTACTACG ACGCCCTCAC CCACCTGCCC AACCGCACGC TGTTCCAGGA CCGTTTGTAC
AACGCCCTGC AACAGGCCGA GCGGCAGAAG GCCTGGGTGG TGCTGATGTT CCTCGACCTC
GACCGTTTCA AGCCGATCAA CGACTCCCTC GGCCATGCCG CCGGCGACCG CATGCTCAAG
GACATGGCCC TGCGCCTGCT GGCCTGCGTG GATGACGACG ACACCGTGGC ACGCATGGGC
GGCGACGAGT TCACCCTGCT GCTGCAACCG CGCCCCACCC GCGAGATGGC CCTGAACCGC
GCCATCCATG TGGCCGAGAA CATTCTCGGC AGCCTGGTGC GGCCGTTTGT GCTGGAAAAC
CGTGAATTCT TCGTCACGGC CAGTATCGGC ATCGCCCTCA GCCCGCAGGA TGGCAGCGAG
CTGAGCCAGT TGATGAAAAA CGCCGACACC GCCATGTACC ACGCCAAGGA ACGCGGCAAG
AACAACTTCC AGTTCTACCA GGCCGAAATG AACGCCAGCG CACTGGAGCG CCTGGAGCTG
GAAAGCGACT TGCGCCATGC CATGGAGCAG AACGAGTTCA TCCTGTACTA CCAGCCGCAG
TTCAGCGGCG ACGGCAAGCG CCTGACGGGC GCCGAGGCCC TGCTGCGCTG GCGCCACCCA
ACCCGTGGTC TGGTGCCACC GGGCGACTTT ATCCCGGTGA TCGAAGAACT GGGCCTGGTG
GTGGACGTGG GTGACTGGGT GCTGCGCGAG GCCAGCCGCC AGCTCAAGGC CTGGCACAAG
GCCAAGGTGC GGGTACCCAA GGTGTCGGTG AACATATCGG CGCGGCAGTT CTCGGACGGG
CAACTGGGCA CGCGGATTGC CAATATCCTC GAAGAAAGCG GCCTGCCACC GGCATGCCTG
GAGCTGGAGC TGACCGAAAG TATCCTGATG CGCGAAGTGA ACGAGGCGCT GCAGATTCTT
GCCAGCCTGA AAAACCTCGG CCTGAGCATT GCGGTGGACG ACTTCGGCAC GGGTTACTCG
TCGCTCAACT ACCTCAAGCA GTTCCCCATC GACGTACTGA AGATCGACCG CACCTTCGTC
GACGGCCTGC CCGAAGGCGA GCAGGACGCG CAGATCGCCC GGGCGATCAT CGCCATGGCC
CACAGCCTCA ACCTGGCGGT AATCGCCGAG GGCGTGGAAA CCCACGAACA GCTGGAGTTC
CTGCGCGAGC ATGGCTGCGA CGAGGTGCAG GGCTACCTGT TTGGGCGGCC GATGCCGGCG
CATCAGTTCG AGGCGCAGTT CTCCAACGAG ACCCTGTTCA TGTTCCATTG A
|
|---|
| Protein sequence | MTNLTHPSSL RTAQQAPAVT LRGSIKGALA LLALILLGLL LWQLFAQFNH TQADLRKQSL
DATAELADHL SLNMAFKAQQ AVNVVQPYVN APTPAALPSL VDTLRERLPA LQSVAWLDSA
GQLRVDSLAG SPDRQLLDEL LTLNQGRPYF FTNSADNRTL YLLLRQAAEQ DRGYWLLRLS
PDYYRELTLY LDGGGHPLWL LENSRSGEVL QSHAPTDTSN APLQSVMLAF IDNSTWQLRG
LFDAELAQQK LLPALIGKCL LVLFCALLPV LALINMRRRQ RALQEDRRRY QEIFEGTGVA
LCVLDLSSLP SQLDRYHLRN RAALKHSLAL DPNLRRSLLL ELKITEVNQV ARQLLNIECH
EGAWQRLIDG TGDGRDSVGM QLIDALIEQR QLLELEVRLP APLGGELHLW LMARLPQQRR
DYQAVILSIS DITSRKQVEL SLLEREGFWS DVVRTVPDQL YVQDVLSQRM IFSNRHLGQT
LGYDRTELAQ MGDRFWELLL HPEDAAHYQA LRQQQRDSGH DQPLQCQLRF RHRDGGWRCY
DIREQVLTRD AEGLVTRIIG VGKDVTVQIE ASQSLRDSEQ RYRMLAESIS DVIFSTDSLL
KLNYVSPSVQ SVLGYQADWI FANGWQSIIA NPAQLTGIYS LMERVSKAMG EPSQLAQLRS
QLPTQLFLFD CLRADGRKIP IELRLVLVWD DDQRFEGVLG VGRDISQQRR AEKDLRMAAT
VFEHSTSAIL ITDPAGYIVQ ANEAFSRVSG YAVSEVLDQL PGMLTVDEQQ EGHLRYVVKQ
LHQRGSWEGE VWLKRRDGDH YPAWVGITAV LDDEGDLASY VCFFTDISER KASEQRIHRL
AYYDALTHLP NRTLFQDRLY NALQQAERQK AWVVLMFLDL DRFKPINDSL GHAAGDRMLK
DMALRLLACV DDDDTVARMG GDEFTLLLQP RPTREMALNR AIHVAENILG SLVRPFVLEN
REFFVTASIG IALSPQDGSE LSQLMKNADT AMYHAKERGK NNFQFYQAEM NASALERLEL
ESDLRHAMEQ NEFILYYQPQ FSGDGKRLTG AEALLRWRHP TRGLVPPGDF IPVIEELGLV
VDVGDWVLRE ASRQLKAWHK AKVRVPKVSV NISARQFSDG QLGTRIANIL EESGLPPACL
ELELTESILM REVNEALQIL ASLKNLGLSI AVDDFGTGYS SLNYLKQFPI DVLKIDRTFV
DGLPEGEQDA QIARAIIAMA HSLNLAVIAE GVETHEQLEF LREHGCDEVQ GYLFGRPMPA
HQFEAQFSNE TLFMFH
|
|---|
| |