| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0642 |
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| Symbol | |
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| ID | 5868388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 729468 |
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| End bp | 730961 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641545730 |
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| Product | methylmalonate-semialdehyde dehydrogenase |
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| Protein accession | YP_001666889 |
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| Protein GI | 167031658 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000000457228 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0000167809 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGCATTG TTCAGCACCT GATCCATGGC GAGCTGGTTT CCAAGGGAGA ACGCACCGCT
GATGTCTTCA ACCCGTCCAC CGGCCAGGCT GTTCGCAAGG TCGAGCTGGC CAGCCGCGCG
ACCGTGCAGG AAGCGATCGA CTCCGCCAAG GCGGCCTTCC CGGCCTGGCG CAACACCCCG
CCGGCCAAGC GCGCCCAGGT GATGTTCCGC TTCAAGCAAT TGCTGGAGCA GAACGAAGCC
AAGATTTCGC AGATGATCAG CGAAGAGCAT GGCAAGACCC TGGAAGACGC AGCTGGCGAG
CTGAAGCGCG GCATCGAGAA CGTCGAGTTC GCCTGTGCAG CGCCAGAGGT TTTGAAGGGC
GAGTACAGCC GCAACGTCGG CCCGAATATC GATGCCTGGT CCGACTTCCA GCCGCTGGGT
GTGGTTGCTG GCATTACCCC GTTCAACTTC CCGGCCATGG TGCCTCTGTG GATGTACCCG
CTGGCCATTG CTTGCGGTAA CGCGTTCATC CTCAAACCTT CCGAGCGCGA CCCAAGCTCG
ACCTTGTACA TTGCCCAACT GCTGCTGGAA GCCGGCCTGC CGAAGGGCAT CCTCAACGTG
GTGCACGGTG ACAAGGAAGC GGTGGATGCG CTTATCGAAG CGCCAGAAGT AAAAGCGCTG
AGCTTCGTTG GTTCAACCCC GATCGCCGAG TACATCTATG CCGAAGGCAC CAAGCGCGGC
AAGCGCGTGC AAGCCTTGGG TGGCGCGAAG AACCACGCCG TGCTGATGCC GGATGCCGAC
CTGGACAATG CTGTAAGCGC ACTGATGGGC GCGGCCTACG GTTCGTGTGG CGAGCGTTGC
ATGGCTATTT CGGTTGCGGT GTGCGTGGGC GACCAGGTAG CCGATGCCCT GATTGCCAAG
CTGGAACCGC AGATCAAGGC GCTGAAGATT GGTGCCGGCA CCTCGTGCGG CCTGGACATG
GGCCCGCTGG TGACTGCTGC TGCCCGTGAC AAGGTAGTGG GTTACATCGA TGACGGGGTT
GCTGCTGGTG CCAAGCTGGT GGTGGATGGC CGTGGCTTGC GTGTGGCCGG TAATGAAGAT
GGCTACTTCG TGGGGGGTAC TTTGTTCGAC AAGGTGACCC CGCAGATGCG CATCTATAAA
GAAGAGATCT TCGGCCCGGT GCTGTGCGTG GTGCGTGTGA ACAGCCTGGA GCAGGCCATG
CAACTGATCA ATGATCACGA GTATGGCAAC GGTACCTGCA TCTTCACCCG TGACGGTGAA
GCGGCGCGCC TGTTCTGCGA CGAGATCGAA GTGGGCATGG TGGGTGTGAA CGTGCCGCTG
CCGGTGCCGG TGGCTTATCA CAGCTTTGGT GGCTGGAAGC GTTCGCTGTT CGGTGACCTG
CATGCCTATG GCCCTGACGG GGTGCGCTTC TATACGCGTC GCAAGGCGAT TACCCAGCGT
TGGCCGCAGC GTGCCAGCCA TGAAGCGTCG CAGTTTGCAT TCCCTAGCCT TTAA
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| Protein sequence | MSIVQHLIHG ELVSKGERTA DVFNPSTGQA VRKVELASRA TVQEAIDSAK AAFPAWRNTP
PAKRAQVMFR FKQLLEQNEA KISQMISEEH GKTLEDAAGE LKRGIENVEF ACAAPEVLKG
EYSRNVGPNI DAWSDFQPLG VVAGITPFNF PAMVPLWMYP LAIACGNAFI LKPSERDPSS
TLYIAQLLLE AGLPKGILNV VHGDKEAVDA LIEAPEVKAL SFVGSTPIAE YIYAEGTKRG
KRVQALGGAK NHAVLMPDAD LDNAVSALMG AAYGSCGERC MAISVAVCVG DQVADALIAK
LEPQIKALKI GAGTSCGLDM GPLVTAAARD KVVGYIDDGV AAGAKLVVDG RGLRVAGNED
GYFVGGTLFD KVTPQMRIYK EEIFGPVLCV VRVNSLEQAM QLINDHEYGN GTCIFTRDGE
AARLFCDEIE VGMVGVNVPL PVPVAYHSFG GWKRSLFGDL HAYGPDGVRF YTRRKAITQR
WPQRASHEAS QFAFPSL
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