| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0640 |
|---|
| Symbol | |
|---|
| ID | 5868386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 727012 |
|---|
| End bp | 727929 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641545728 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001666887 |
|---|
| Protein GI | 167031656 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.148889 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.000410503 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGAC GCCCCGATCC ACTCGCTCAA GTCAGCGATT TCGACATCCG CTTGCTGAAG
ATCTACCGCA GCGTCGTCGA GTGCGGTGGC TTCTCAGCCG CCGAAAACGT ACTGGGCATT
GGCCGCTCGG CCATCAGCCA GCAGATGAAC GACCTCGAAC AACGCCTCGG CCTGCGTCTG
TGCCAGCGTG GTCGCGCCGG TTTCTCGCTG ACCGAGGAAG GCCGCGAGGT CTACCACTCG
GCACTGCAAC TGCTCAGCGC TCTGGAGAGC TTCCGCACCG AGGTCAACGG CCTGCACCAG
CATTTGCGTG GCGAACTGAA CATTGGCCTG ACCGACAACC TGGTGACGCT GCCACATATG
CGCATCACCC ATGCCCTGGC CGAGCTCAAG GATCGTGGCC CGGATGTACG CATCCAGATC
CGCATGATCG CCCCCAGCCA GGTCGAGCAC GGCGTGCTCG ACGGCAGCCT GCACGTGGGC
GTAGTGCCGC AGACCAGCCC GTTGTCGGGC TTGGAGTACC AGCCGTTGTA CAGCGAACGC
TCGCTGCTGT ACTGCGCGGT TGGCCATCCG TTGTTCTATG CCGATGACCA GCAAATCGAC
GACGAGCGCC TCAATAGCCA GGAAGCCATC ACCCCCACCT TCCGCCTGCC TGCCGAAATT
CAGGCGCATT ACCAGGCGCT GAATTGCACG GCCAGCGCTT CGGACCGCGA GGGCATGGCG
TTTCTGATCC TGACCGGGCG CTACATCGGC TACCTGCCCG ACCACTACGC CACGTTCTGG
GTACAACAGG GCCGTTTGCG TGCGCTCAAG CCCCGGCAGC GCTTCTACGA CCTGAGCCTG
AGCTGGGTTA CCCGCAAAGG CCGGCGCCCC AACCTGGTGC TGGAAAGCTT CCTCGAAAGC
CTGGCTGCGA CACGTTGA
|
|---|
| Protein sequence | MSRRPDPLAQ VSDFDIRLLK IYRSVVECGG FSAAENVLGI GRSAISQQMN DLEQRLGLRL
CQRGRAGFSL TEEGREVYHS ALQLLSALES FRTEVNGLHQ HLRGELNIGL TDNLVTLPHM
RITHALAELK DRGPDVRIQI RMIAPSQVEH GVLDGSLHVG VVPQTSPLSG LEYQPLYSER
SLLYCAVGHP LFYADDQQID DERLNSQEAI TPTFRLPAEI QAHYQALNCT ASASDREGMA
FLILTGRYIG YLPDHYATFW VQQGRLRALK PRQRFYDLSL SWVTRKGRRP NLVLESFLES
LAATR
|
|---|
| |