Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0634 |
Symbol | |
ID | 5868380 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 721023 |
End bp | 722204 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641545722 |
Product | Bcr/CflA subfamily drug resistance transporter |
Protein accession | YP_001666881 |
Protein GI | 167031650 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily [TIGR00880] Multidrug resistance protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0000940614 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAACCTGC GAATGGTGCT CATCCTGGGC GCACTCAGTG CGTTTGGGCC TTTGGCGATC GACTTCTACC TGCCCGCCTT CCCGGCCATG GCGCAAGCGT TCGCTACCGA TGAAAAACAC GTCCAGGCCA CGTTGGCTGC CTACTTCCTC GGCCTGTCCA TCGGCCAGTT GGCCTATGGG CCAGTTGCCG ACCGCTTTGG CCGACGCCTA CCGTTGATGT TCGGCGTGAC CCTGTTCACC CTGGCGTCAC TGGCTTGTGC CTATGCCCCC AACCTCGACA CGTTGGTACT GGCGCGTTTC GTCCAGGCAC TGGGCGGTTG TGCCGGCATG GTGCTGTCGC GGGCCATCGT CAGCGACAAG TGCGACCCGG TAGCCTCAGC GAAAGTGTTC TCGCAGCTGA TGCTGGTCAT GGGCCTGGCG CCGATCCTGG CACCGATGCT GGGTGGGGTG CTGGTGAACC TGGCCGGCTG GCAGTCGATT TTCCTCGCGC TGAGCCTGTT CAGTGCCGGC TGCCTGCTGG CGGTCAGCCT GGGCCTGCCT GAAAGCCTGC CTGAGCATAT ACCCCGCCAG CCGCTGTCTG GCGCCTTGCG CCAGTACCTG CGTTTGCTCG CTGACCGGGC TTTCCTCGGC CATGCGTTGA CCGGCGGTAT CGCTATTGCC GGCATGTTTG CCTATATCGC CGGTTCGCCC TTCGTATTCA TCAAGCTGTA TGGGGTGCCC GCCGAGCATT ACGGCTGGTT GTTCGGTACC AATGCTGCGG GCTTTATTCT GGTGGCACAG GTGAACGCCC GCTTGCTGGC CAGGCGCGGG CCAGCCTTCC TGCTGGCCCG CGCGGTTTGG CTGTACCTGG TTGCGGGCCT GGTGCTGCTG GGCGTGGCGG CATTGCGACC CGCGCAGTTG TGGCCGCTGC TGATACCGCT GTTCATCTGT ATCGCCAGCC TTGGTTGCAT CATTCCCAAT GCTTCCGCCT GCGCCATGAG CGGGCAGGGT GCGCGGGCCG GCAGTGCCTC GGCACTGATG GGCTGCGTGC AGTTCAGCGT TGCCGCAGGT GCGGCGGCGC TGGTCGGGCT GCTGCATGAT GGCAGTGCAG TGCCGATGGC AATGGTGATC AGCCTGTGCG GGGCGCTTGT GGTCAGTGTC GCGCTGTTGA CCCGACGTTT GCAGGCCAAG GCTCCCGCAT GA
|
Protein sequence | MNLRMVLILG ALSAFGPLAI DFYLPAFPAM AQAFATDEKH VQATLAAYFL GLSIGQLAYG PVADRFGRRL PLMFGVTLFT LASLACAYAP NLDTLVLARF VQALGGCAGM VLSRAIVSDK CDPVASAKVF SQLMLVMGLA PILAPMLGGV LVNLAGWQSI FLALSLFSAG CLLAVSLGLP ESLPEHIPRQ PLSGALRQYL RLLADRAFLG HALTGGIAIA GMFAYIAGSP FVFIKLYGVP AEHYGWLFGT NAAGFILVAQ VNARLLARRG PAFLLARAVW LYLVAGLVLL GVAALRPAQL WPLLIPLFIC IASLGCIIPN ASACAMSGQG ARAGSASALM GCVQFSVAAG AAALVGLLHD GSAVPMAMVI SLCGALVVSV ALLTRRLQAK APA
|
| |