| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0625 |
|---|
| Symbol | |
|---|
| ID | 5868371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 710700 |
|---|
| End bp | 711551 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641545713 |
|---|
| Product | dehydratase |
|---|
| Protein accession | YP_001666872 |
|---|
| Protein GI | 167031641 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2030] Acyl dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00406567 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGAC AGTGGCACGA CCTGCACAGC CCAACGGCCC GCGCCAGCCT TTATCTGCGT
GCAGCCAGCA AGCGCACAAT CAGCGGCGAG CAGTTGCCGG AGGATGGCCT GCGCTGTTTC
ATCCGGGTTC AGCCGGGCAA TCTGAACGCC TATCGAAGGC TGTGCCACTT TCCCGATGAT
GGCCGCCTGT CGGCGGCTTA TCCCCATGTC ATGGCGTTTA CCCTGCAATT GCAGTTGATG
ACCGCAAATG ACTTCCCCTT CCCGCTACTC GGCCTGGTGC ACCTGCGCAA CCGCATTGAG
GTACTGCGCC CGCTTGGCGC TATCGAAGGG CTGCGCTTTG CGGTGTATGC GCACAACCTG
CAGCCCCATG CCAAAGGTGG CACCTTCGAC CTGGTCACCG AGGCTGAAGA CGGCATCGGT
CTGCTGTGGC GTGAAACCAG CCGTATGCTG GTGCGTGGGT TGAAGCTGGA AGGCGAAGTG
GATGAGCCCG CTGACGCCGA ACCTGGTTCT TTGCCCGAGG CCACCCGCTG GTACGCCGAC
AGTGATATCG GCCGGCGTTA TGCCAAGGTT TGCGGGGATT ACAACCCTAT TCACCTCAGT
GCAGTCAGTG CGCGGTTGTT CGGCTTTCCC ACGTCCATTG CCCATGGCAT GTGGACCAAG
GCCATGGCCT TGGCCGCATT ACGCGGGCAC CTGCCGCACA GTGGCTATGC CTTCGAGGTG
GATTTTCGCA AGCCGGTAAG GTTGCCTTCG GAGGTGGTGC TCAGTGCCAG TGAGGCGGGC
CCTTCGGGGA CGTTGCGGCT GGATGGCCAT GGAGGTGTGC TGCATATGGT CGGGCGCTGG
GCTCTGCTGT AG
|
|---|
| Protein sequence | MSRQWHDLHS PTARASLYLR AASKRTISGE QLPEDGLRCF IRVQPGNLNA YRRLCHFPDD
GRLSAAYPHV MAFTLQLQLM TANDFPFPLL GLVHLRNRIE VLRPLGAIEG LRFAVYAHNL
QPHAKGGTFD LVTEAEDGIG LLWRETSRML VRGLKLEGEV DEPADAEPGS LPEATRWYAD
SDIGRRYAKV CGDYNPIHLS AVSARLFGFP TSIAHGMWTK AMALAALRGH LPHSGYAFEV
DFRKPVRLPS EVVLSASEAG PSGTLRLDGH GGVLHMVGRW ALL
|
|---|
| |