| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0617 |
|---|
| Symbol | |
|---|
| ID | 5868363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 702612 |
|---|
| End bp | 704966 |
|---|
| Gene Length | 2355 bp |
|---|
| Protein Length | 784 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641545705 |
|---|
| Product | penicillin-binding protein 1C |
|---|
| Protein accession | YP_001666864 |
|---|
| Protein GI | 167031633 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
|---|
| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.701974 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0771525 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGCT TAGCGCGGCC ACATCGCCAT GCGGGCAGGA TGTTGCGTGC CACGCTGATC
GGCGTGCTGG TGCTGTGCGG CCTGTTGTGG CTGGCTGATC GTATCTGGCC GCTGCCCATG
CCGGGCGACG ACCTGGCCCG GGTGGTGCTG GCCGAGGACG GGACGCCGTT GTGGCGCTTT
GCCGATGCTG ATGGCGTGTG GCGCTACCCG GTCAGCCCCG AACAGGTGTC GCCGCTGTAC
CTGCAGGCCT TGCTGACTTA CGAGGACCGC TGGTTCTACA GCCACCCTGG GGTCAATCCA
CTGGCCTTGG CCCGCGCTGC CTGGTTGAAC CTGCGCGGTG GGCGCGTGGT GTCGGGCGGC
AGTACGTTGT CGATGCAGGT GGCGCGCCTG CTCGACCCGC ACGACCGCAC CCTGGCTGGC
AAACTGCGCC AGTTGTGGCG TACGGCGCAG CTGGAATGGC ACTTGTCCAA GCGCGAAATC
CTGCAGATCT ACCTGGACCG CGCGCCGTTC GGCGGCACCT TGCAGGGCGT GGCCGCTGCC
AGTTGGGCGT ACCTGGGCAA GTCGCCCTTG CACCTGACAC CCGCTGAAGC GGCGCTGCTG
GCGGTGCTGC CCCAGGCACC CAGCCGGCTG CGCCCAGACC GCCACCACGA GCGTGCTCAG
CGCGCGCGCG ACAAGGTGTT GCAGCGCCTG GCCGAATACC AAGTGTGGCC TGAGCGGCAA
ATCCGCGAGG CGGCCGAGGA ACCGTTGGTG TTGGCGCCAC GCCAGGAGCC GGCCCTGGCA
CCCTTGCTGG CCCGGCGCCT GAACAGCGCC GACAGCCCGC CACTGATTCG CACCACGCTC
GATGCCGCAC TTCAGCGGCG CCTCGAAGAC CTGCTGCTGG GTTGGCGCGC CCGGCTACCG
GAGCGCACCT CGGCCGCCGT CCTGGTGGTC GATGCGCAGA CCATGGCGGT GCGCGCTTAC
CTGGGCTCGA TAGATTTGGC GGACGAGCGC CGTTTTGGCC ATGTCGATAT GGTGCGCTCG
CTGCGTTCGC CCGGTTCCAC CCTCAAGCCG TTTCTCTACG GCATGGCGCT GGACGATGGC
CTGATCCATT CCGAATCGCT GCTGCAGGAT GTGCCACGAC GTTATGGCGA TTATCGCCCC
GGCAACTTCT CCATGGGCTT CAGCGGCCCG GTCTCGGCCA GCTCGGCGCT GGCCCTGTCG
CTCAACCTGC CGGCCGTGCA ATTGCTGGAG GCCTATGGCC CGAAACGCTT TGCCGCGCAG
CTGCGCATGG CGGGCGTGCC GCTGATATTG CCGCCGCTGG CCGAGCCCAA CCTGTCGTTG
ATACTGGGGG GCGCCGGCAG CCGGCTGGAA GATCTGGTGG GTGGCTACGC GGCGCTGGCA
CGGGACGGTA ACAGTGCGAA GGTGCGTTTG CAGCCGCAGG ACCCGCTGGT AGAGCGACGC
CTGTTGTCGC CAGGCGCGGC GTGGATCATC CGACGCATCC TCAGTGGCCA GGCTCGCCCC
GACCGCGACC CGCATGCCGA ACTGGTGCAG CGCCCGCAAC TGGCCTGGAA AACCGGCACC
AGCTATGGCT TTCGCGATGC CTGGTCGATC GGCGTAGGGC CGCGCTACCT GATCGGCGTG
TGGATCGGTC GCCCCGATGG CACGCCGGTT CCCGGGCAAT TTGGCTTGGC TTCGGCGGCG
CCGCTGATGC TGCAGGTGCA TGACCTGCTG AGCAACCGTG ACAGTCAGCG TGGCATCAGC
GTGCCAGTGG CGCGTGTACC GGCAAACGTC GGTGTGGCGG CGATCTGCTG GCCGCTGGGC
CAGCCGATGA GCAAGCAGGA CCCCAACTGC CGACGCCAGC GCTTCGCCTG GACCCTGGAT
GGCACCACGC CGCCAACCTT GCAGGCCGCT GACCAACCGC TGGGCCTGGG TTTGCGCGAA
AACGTGTGGG TCAACGACCA GGGCCTGCGT GTCGATGGCA GCTGCCCGGG CGCCAAGCCC
CGTGAAATCG CCTTGTGGCC GGCGCCGTTG GAGCCCTGGC TGCCCCGCCT CGAACGGCGC
GCGGCGCGTC TGCCCGCCCT CGACCCGGCC TGCCCGCCGC AACTACCGGC CAGCGCGCCA
CCGCTGTCGA TCGTGGGCGT GCGCCCCGGC GATAATCTGC GTCGCCCAGC CACCAGCAGT
GAGCCGCTGC AATTGCATGT ATCGGCGTTG GGTGGTGGTG GACGGCGCTG GTGGTTCCTC
AACGGCCAGC CGCTGGGTGA AACCCAAGGG CAGGACAGCT TGCTGCTGCG CTTGCCCCAG
GTCGGGCAGG CCGAACTCAG CGCGCTGGAC GAAAGTGGCG AGACGGCGCG GGTGGCGTTC
CAGGTCAGCG AGTAG
|
|---|
| Protein sequence | MPSLARPHRH AGRMLRATLI GVLVLCGLLW LADRIWPLPM PGDDLARVVL AEDGTPLWRF
ADADGVWRYP VSPEQVSPLY LQALLTYEDR WFYSHPGVNP LALARAAWLN LRGGRVVSGG
STLSMQVARL LDPHDRTLAG KLRQLWRTAQ LEWHLSKREI LQIYLDRAPF GGTLQGVAAA
SWAYLGKSPL HLTPAEAALL AVLPQAPSRL RPDRHHERAQ RARDKVLQRL AEYQVWPERQ
IREAAEEPLV LAPRQEPALA PLLARRLNSA DSPPLIRTTL DAALQRRLED LLLGWRARLP
ERTSAAVLVV DAQTMAVRAY LGSIDLADER RFGHVDMVRS LRSPGSTLKP FLYGMALDDG
LIHSESLLQD VPRRYGDYRP GNFSMGFSGP VSASSALALS LNLPAVQLLE AYGPKRFAAQ
LRMAGVPLIL PPLAEPNLSL ILGGAGSRLE DLVGGYAALA RDGNSAKVRL QPQDPLVERR
LLSPGAAWII RRILSGQARP DRDPHAELVQ RPQLAWKTGT SYGFRDAWSI GVGPRYLIGV
WIGRPDGTPV PGQFGLASAA PLMLQVHDLL SNRDSQRGIS VPVARVPANV GVAAICWPLG
QPMSKQDPNC RRQRFAWTLD GTTPPTLQAA DQPLGLGLRE NVWVNDQGLR VDGSCPGAKP
REIALWPAPL EPWLPRLERR AARLPALDPA CPPQLPASAP PLSIVGVRPG DNLRRPATSS
EPLQLHVSAL GGGGRRWWFL NGQPLGETQG QDSLLLRLPQ VGQAELSALD ESGETARVAF
QVSE
|
|---|
| |