| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0614 |
|---|
| Symbol | |
|---|
| ID | 5868360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 695662 |
|---|
| End bp | 696999 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641545702 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001666861 |
|---|
| Protein GI | 167031630 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0166177 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCAAC TCTCCGCCGA CTGGCGCCAC CGCCCTACCC ACCACAAGGT CTGGGCGCTG
GCCGCACCGA TGATCTTGTC CAACATCTCC GTACCGCTGG TGGCGCTGGT CGACAGCACC
GTCATCGGCC ACCTCCCCCA CGCCCACCAG CTAGGCGCCG TGGCCGTGGG CGCCACTTTG
TTCACCTTCA TGGTTGGCCT GATGGGCTTC CTGCGCATGG GCTCCACTGG CTTCGCCGCA
CAGGCCGCTG GCCGTGGCGA CGGCGCCGCG TTGCGCCAGG TGCTGGTACA AGGGCTGCTT
TTGGCGGTCG GTTTCGCCCT GATGATCGGC CTGCTGGCTC TGCCGTTCAG CCAGCTGGCA
CTGCATGCGA TGCAACCCAG TGCAGCCCTG CAGCAATCCA CCGAAGACTT CTTCCATACC
CGCCTGCTTG GCCTGCCTGC GGCGCTTGCC AGCTATGCGC TGGTTGGCTG GTTTCTGGGC
ACCCAGAACG CCCGGGCGCC ACTGGCCATC CTGCTGACCA CCAACCTGCT GAACATCGTC
CTGAACCTGT GGTTCGTGCT GGGCCTGGAT TGGGGCGTAC TGGGGTCGGC ACGGGCTTCG
GTCATTGCCG AATGGAGCGC CGCGCTGCTC GGCCTGGCCC TGACCCGCCC GGCACTGCGT
GCCTACCCGG GGCAGATCGC CTGGGCAGCG CTCAAACGCT GGCAGGCCTG GCGCCCGCTG
CTGGCGGTCA ACCGCGATAT TTTCCTGCGC AGCCTGGCGC TGCAACTGGT GTTCCTGCTG
ATTACTGTGC AGGGGGCGCG CCTGGGTGAG GCCACGGTGG CGGCCAACGC CCTGCTGCTC
AATGGCCTGC TGCTGACGGC CTATGCCCTC GACGGGCTGG CGCATGCGGT CGAGGCCCTG
TGCGGCCATG CCATTGGTGC CCGCGACCGC GACACCTTGC GCCGTTCGTT GGTGGTGGCC
TGTGGCTGGT CGCTGATCAC CAGTTTGGGG TTTGCCGGGT TGTTCCTGCT GGGCGGGCAC
TTGTTCATCG ACCTGCAGAC CGACATCGAA AGCGTGCGCA ATGCGGCCTA TCCGTATTTG
CCCTACCTGG CGGTACTGCC GTTGATTGCA GTGTGGAGTT ACTTGCTGGA TGGGTTGTTC
ATCGGTGCGA CGCGGGCGCG GGAGATGCGC AATGCGATGG TGGTGTCGGT ACTGATTGCA
CTGCCGGTGG CGGTGGCCAT GAACGGGTTC GGCAACCATG GGCTATGGTT GGCGTTTCTC
GGGTTCATGG GGTTGCGGGC GGTGACGCTG GGGTGGGTGG GGTGGCGGTT GCAGCAGAAA
GGTGAGTGGG TTCGGTAA
|
|---|
| Protein sequence | MSQLSADWRH RPTHHKVWAL AAPMILSNIS VPLVALVDST VIGHLPHAHQ LGAVAVGATL
FTFMVGLMGF LRMGSTGFAA QAAGRGDGAA LRQVLVQGLL LAVGFALMIG LLALPFSQLA
LHAMQPSAAL QQSTEDFFHT RLLGLPAALA SYALVGWFLG TQNARAPLAI LLTTNLLNIV
LNLWFVLGLD WGVLGSARAS VIAEWSAALL GLALTRPALR AYPGQIAWAA LKRWQAWRPL
LAVNRDIFLR SLALQLVFLL ITVQGARLGE ATVAANALLL NGLLLTAYAL DGLAHAVEAL
CGHAIGARDR DTLRRSLVVA CGWSLITSLG FAGLFLLGGH LFIDLQTDIE SVRNAAYPYL
PYLAVLPLIA VWSYLLDGLF IGATRAREMR NAMVVSVLIA LPVAVAMNGF GNHGLWLAFL
GFMGLRAVTL GWVGWRLQQK GEWVR
|
|---|
| |