Gene PputGB1_0499 details

Gene Information

• Locus tag: PputGB1_0499
• Symbol: rplF
• ID: 5868245
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas putida GB-1
• Kingdom: Bacteria
• Replicon accession: NC_010322
• Strand: +
• Start bp: 575590
• End bp: 576123
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 641545587
• Product: 50S ribosomal protein L6
• Protein accession: YP_001666746
• Protein GI: 167031515
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.00000356471
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 50
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCTCGCG TCGCTAAGAA CCCCGTTAAG CTGCCATCCG GTGTCGAAGT CAAATTCGCT 
GGCCAGCAGC TTTCGGTGAA GGGTGCTAAA GGCACTCTCG AACTGAACGT TCACTCGTCT 
GTTGAAGTTA CCGAAGAGTC TGGTGAGCTG CGTTTCGTCG CTCGCAATGG TGACCAGCAA 
GCTCGTGCCA TGGCCGGTAC TACCCGTGCC CTGGTCAACA ACATGGTCCA AGGCGTAAGC 
CAAGGCTTCG AGCGTAAGCT CCAGCTGGTC GGTGTTGGTT ACAAGGCACA GGCCAAGGGC 
ACCGTCCTGA ACCTGGCCCT GGGCTTCTCT CACCCAGTGG ACTACGAACT GCCAGCCGGT 
ATCACCGCTG AAACACCTAG CCAGACCGAC ATCCTGATCA AGGGTATCGA TAAGCAGCTG 
GTAGGTCAGG TGGCCGCTGA AATCCGCGAC TTCCGTCCGC CAGAGCCTTA CAAAGGTAAA 
GGTGTGCGTT ACGCGGACGA AGTAGTCCGT CGTAAAGAAG CCAAGAAGAA GTAG 

 

Protein sequence

MSRVAKNPVK LPSGVEVKFA GQQLSVKGAK GTLELNVHSS VEVTEESGEL RFVARNGDQQ 
ARAMAGTTRA LVNNMVQGVS QGFERKLQLV GVGYKAQAKG TVLNLALGFS HPVDYELPAG 
ITAETPSQTD ILIKGIDKQL VGQVAAEIRD FRPPEPYKGK GVRYADEVVR RKEAKKK