| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0483 |
|---|
| Symbol | rpsJ |
|---|
| ID | 5868229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 568379 |
|---|
| End bp | 568690 |
|---|
| Gene Length | 312 bp |
|---|
| Protein Length | 103 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641545571 |
|---|
| Product | 30S ribosomal protein S10 |
|---|
| Protein accession | YP_001666730 |
|---|
| Protein GI | 167031499 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0051] Ribosomal protein S10 |
|---|
| TIGRFAM ID | [TIGR01049] ribosomal protein S10, bacterial/organelle |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.000151275 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAATC AGCAAATCCG TATCAGGTTG AAGGCTTTCG ACCATCGCCT GATCGACCAA
TCCACCCAGG AAATCGTGGA AACCGCGAAA CGTACTGGTG CACAAGTGCG TGGTCCAATT
CCACTGCCTA CCCGCAAAGA GCGTTTCACC GTTCTGGTCT CCCCGCACGT CAACAAAGAC
GCGCGTGACC AGTACGAGAT TCGCACTCAT AAGCGTGTTC TGGACATCGT CCAGCCAACG
GATAAAACCG TTGACGCGCT GATGAAGCTT GATCTGGCGG CAGGTGTGGA AGTACAGATC
AGCCTCGGCT AA
|
|---|
| Protein sequence | MQNQQIRIRL KAFDHRLIDQ STQEIVETAK RTGAQVRGPI PLPTRKERFT VLVSPHVNKD
ARDQYEIRTH KRVLDIVQPT DKTVDALMKL DLAAGVEVQI SLG
|
|---|
| |