| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0466 |
|---|
| Symbol | |
|---|
| ID | 5868205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 540864 |
|---|
| End bp | 542063 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641545547 |
|---|
| Product | tyrosyl-tRNA synthetase |
|---|
| Protein accession | YP_001666713 |
|---|
| Protein GI | 167031482 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0162] Tyrosyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00234] tyrosyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000000141551 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.218715 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCGG TTGAAGAGCA GCTGGCGCTT ATCAAGCGCG GTGCGGAAGA AGTACTGGTC
GAGTCGGAAC TGGTGGAGAA GCTCAAGCGC GGCCAGCCTC TGCGCATCAA GGCCGGCTTC
GATCCGACCG CACCTGACCT GCACCTTGGC CATACGGTGC TGATCAACAA GCTGCGCCAG
TTCCAAGAAC TGGGTCATCA GGTCATCTTC CTTATAGGTG ACTTCACCGG CATGATCGGC
GACCCCAGCG GCAAGAGTGC CACGCGCCCG CCGCTGACTC GCGAGCAGGT GCTGGACAAT
GCCGAGACCT ACAAGCAGCA GGTGTTCAAG ATCCTCGACC CGGCCAAGAC CGAGGTCGCG
TTCAACTCCA CCTGGATGGA CAAGCTGACC CCAGCCGACT TCATTCGCCT TGCGTCGCAA
TATACCGTTG CGCGCATGCT CGAGCGTGAT GACTTCGACA AGCGTTACAC CACCAACCAG
CCGATTGCCA TCCACGAGTT CCTCTACCCG CTGGTGCAAG GCTACGACTC GGTGGCGCTG
AAGGCGGACG TCGAGCTGGG TGGCACCGAC CAGAAGTTCA ACCTGTTGAT GGGGCGCGAG
CTGCAGCGCG CCTATGGCCA GGAAGCGCAG AACATCGTCA CCATGCCGCT GCTCGAGGGG
CTTGATGGCG TGAAGAAGAT GTCGAAGTCG CTGGGTAACT ATGTAGGTAT CCAGGAAGCG
CCGGGGGTTA TGTACGGCAA GCTGGTATCG ATTCCCGATA CCCTGATGTG GCGCTACTTC
GAGCTGCTGA GCTTCCGTTC GATGGAGGAG ATCGAGCAGT TCCGTGCCGA CGTCGCCAAG
GGTGCCAACC CGCGGGACAT CAAGATCAAG CTGGCAGAAG AGATCGTTGC GCGCTTCCAT
GGTGAAGAGG CTGCCGCCAA TGCTCACCGT GCTGCGGGTA ACCGCATGAA GGAAGGCGAG
CTGCCGGAAG ACCTGCCGGA GATCGAAGTG GCTGCGTCGG AAGACCTGCC GATCGCTGCC
GTGCTGAACC GGGCTGGCCT GGTGAAGAAC TCGGCACAGG CGCGTGACTT GCTGAATGGC
GGTGCGGTGA AGGTTGATGG TGCGGTGGTC GACAAGGACT TCATGTTTGT CCTCGGTGCT
ACTCACGTGT GCCAGGCGGG GAAGAAGTCG TTTGGCCGGG TTACCCTTAA GGCCGAGTGA
|
|---|
| Protein sequence | MKSVEEQLAL IKRGAEEVLV ESELVEKLKR GQPLRIKAGF DPTAPDLHLG HTVLINKLRQ
FQELGHQVIF LIGDFTGMIG DPSGKSATRP PLTREQVLDN AETYKQQVFK ILDPAKTEVA
FNSTWMDKLT PADFIRLASQ YTVARMLERD DFDKRYTTNQ PIAIHEFLYP LVQGYDSVAL
KADVELGGTD QKFNLLMGRE LQRAYGQEAQ NIVTMPLLEG LDGVKKMSKS LGNYVGIQEA
PGVMYGKLVS IPDTLMWRYF ELLSFRSMEE IEQFRADVAK GANPRDIKIK LAEEIVARFH
GEEAAANAHR AAGNRMKEGE LPEDLPEIEV AASEDLPIAA VLNRAGLVKN SAQARDLLNG
GAVKVDGAVV DKDFMFVLGA THVCQAGKKS FGRVTLKAE
|
|---|
| |