| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0445 |
|---|
| Symbol | |
|---|
| ID | 5868184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 520963 |
|---|
| End bp | 521790 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641545526 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001666692 |
|---|
| Protein GI | 167031461 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.355956 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAGCC CATACATGTC GCCCGTGGAA CGGGTCTGGT TCTATAGCCT GCGCATTCTT
TGTGGCTTGA TCCTGCTGTT CCTGATCTTG CCGGTGCTGG TGATCGTGCC GCTGTCGTTC
AACAGTGGCA GCTTCCTGGT GTACCCGCTG CAGGGCTTCT CGCTGCAGTG GTATCAGGAC
TTCTTCGGCT CGGCCGAGTG GATGCGGGCG TTGAAGAACA GCATCATCGT CGCCCCGGCG
GCCACGGTGC TGGCCATGGT GTTCGGCACC CTGGCGGCCA TCGGGCTGAC CCGTGGCGAC
TTCCCCGGCA AGTCGCTGGT GATGGCGCTG GTGATATCGC CAATGGTGGT CCCGGTGGTG
ATCATCGGGG TCGCCAGTTA CCTGTTCTTC GCCCCACTGG GCATGGGCAA CAGTTTTACC
TCGCTGATTC TGGTGCATGC GGTGCTGGGT GTGCCGTTCG TCATCATTAC CGTGTCGGCA
ACCTTGCAGG GCTTCAACTA CAACCTGGTG CGTGCGGCGG CCAGCCTGGG TGCCTCGCCG
CTGCTGACCT TCCGCCGAGT GACCCTGCCA CTGATTGCAC CCGGTGTTAT CTCGGGCGCG
CTGTTCGCCT TTGCCACTTC GTTTGACGAA GTGGTGGTAA CACTGTTTCT GGCCGGGCCG
GAGCAGGCGA CCCTGCCGCG GCAGATGTTC AGCGGTATCC GCGAAAACCT CAGCCCGACC
ATTGCTGCGG CGGCAACCTT GCTGATTGCT TTCTCGGTGG TGTTGCTGCT GACCCTGGAG
TGGCTGCGTG GGCGCAGCGA GAAGCTGAGG ACCCAACAGC CGGCCTGA
|
|---|
| Protein sequence | MLSPYMSPVE RVWFYSLRIL CGLILLFLIL PVLVIVPLSF NSGSFLVYPL QGFSLQWYQD
FFGSAEWMRA LKNSIIVAPA ATVLAMVFGT LAAIGLTRGD FPGKSLVMAL VISPMVVPVV
IIGVASYLFF APLGMGNSFT SLILVHAVLG VPFVIITVSA TLQGFNYNLV RAAASLGASP
LLTFRRVTLP LIAPGVISGA LFAFATSFDE VVVTLFLAGP EQATLPRQMF SGIRENLSPT
IAAAATLLIA FSVVLLLTLE WLRGRSEKLR TQQPA
|
|---|
| |