Gene PputGB1_0328 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_0328 
Symbol 
ID5868068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp378616 
End bp379560 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content63% 
IMG OID641545410 
Productcholine ABC transporter, periplasmic binding protein 
Protein accessionYP_001666577 
Protein GI167031346 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components 
TIGRFAM ID[TIGR03414] choline ABC transporter, periplasmic binding protein 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACAGCT TGATCCGCCG CAGCCTGTTG ACCCTTGCCC TGAGCAGCAT CGCCACTTCC 
CCGCTTTTCG CCGCAGAGCC TGCGGCCTGC AAAAACGTCC GCTTGGGCGT GGTCAACTGG
ACCGACGTCA TCGCCACCAG CGCCATGGCC CAGGTGCTGC TCGATGGCCT GGGCTACCAG
ACCAAACAGA CCAGCGCCTC GCAGCAGATC ATCTTCGCCG GCATACGCGA CAAGCGCCTG
GACATGTTCC TGGGTTACTG GAACCCGATC ATGACCCAAA CCATTACCCC GTTCGTCGAT
GCCAACCAGG TCAAAGTGCT GGACAAGCCA AGCCTGGAGG ACGCCCGCGC CACCCTGGCC
GTACCGAAAT ACCTCTACGA CAAGGGTTTG AAGACCTTCG CCGACATCCA CAAGTTCGAG
AAAGAGCTGG GTGGCAAGAT CTATGGCATC GAACCCGGCT CCGGTGCCAA CACCCAGATC
AAGGCGATGA TCACCAAGAA CCAGTTCGAC CTGGGCCAGT TCCAGCTGGT CGAGTCCAGC
GAGGCCGGCA TGCTGGCCGC CGTCGATCGC GCCGTGCGGC GCAAGGAAGC CGTGGTGTTC
TTCGGTTGGG CGCCGCACCC GATGAACGTG AACATCGACA TGGCCTACCT GGGTGACAGC
CAGGATGCGC TCGGCCCTGA CGAAGGCCGC GCGACGGTGT GGACGGTGAC TGCGCCGGAT
TACGCCGAAC GCTGCCCCAA TGCCCACCGC CTGCTGGCCA ACCTGAACTT CAGCGCCGAG
GACGAGAGCC GCATGATGCA GCCGCTGCTC GACCACAAGG ATGCGCTGGA ATCGGCCCGC
CAATGGCTCA AGGACCACCC CGACGACAAG GCCCGCTGGC TTGAGGGTGT GACCACCTTC
GATGGCAAGC CGGCTGCGGA CAATCTGAAG CTTACCGCTA ACTGA
 
Protein sequence
MHSLIRRSLL TLALSSIATS PLFAAEPAAC KNVRLGVVNW TDVIATSAMA QVLLDGLGYQ 
TKQTSASQQI IFAGIRDKRL DMFLGYWNPI MTQTITPFVD ANQVKVLDKP SLEDARATLA
VPKYLYDKGL KTFADIHKFE KELGGKIYGI EPGSGANTQI KAMITKNQFD LGQFQLVESS
EAGMLAAVDR AVRRKEAVVF FGWAPHPMNV NIDMAYLGDS QDALGPDEGR ATVWTVTAPD
YAERCPNAHR LLANLNFSAE DESRMMQPLL DHKDALESAR QWLKDHPDDK ARWLEGVTTF
DGKPAADNLK LTAN