Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0328 |
Symbol | |
ID | 5868068 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 378616 |
End bp | 379560 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641545410 |
Product | choline ABC transporter, periplasmic binding protein |
Protein accession | YP_001666577 |
Protein GI | 167031346 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACAGCT TGATCCGCCG CAGCCTGTTG ACCCTTGCCC TGAGCAGCAT CGCCACTTCC CCGCTTTTCG CCGCAGAGCC TGCGGCCTGC AAAAACGTCC GCTTGGGCGT GGTCAACTGG ACCGACGTCA TCGCCACCAG CGCCATGGCC CAGGTGCTGC TCGATGGCCT GGGCTACCAG ACCAAACAGA CCAGCGCCTC GCAGCAGATC ATCTTCGCCG GCATACGCGA CAAGCGCCTG GACATGTTCC TGGGTTACTG GAACCCGATC ATGACCCAAA CCATTACCCC GTTCGTCGAT GCCAACCAGG TCAAAGTGCT GGACAAGCCA AGCCTGGAGG ACGCCCGCGC CACCCTGGCC GTACCGAAAT ACCTCTACGA CAAGGGTTTG AAGACCTTCG CCGACATCCA CAAGTTCGAG AAAGAGCTGG GTGGCAAGAT CTATGGCATC GAACCCGGCT CCGGTGCCAA CACCCAGATC AAGGCGATGA TCACCAAGAA CCAGTTCGAC CTGGGCCAGT TCCAGCTGGT CGAGTCCAGC GAGGCCGGCA TGCTGGCCGC CGTCGATCGC GCCGTGCGGC GCAAGGAAGC CGTGGTGTTC TTCGGTTGGG CGCCGCACCC GATGAACGTG AACATCGACA TGGCCTACCT GGGTGACAGC CAGGATGCGC TCGGCCCTGA CGAAGGCCGC GCGACGGTGT GGACGGTGAC TGCGCCGGAT TACGCCGAAC GCTGCCCCAA TGCCCACCGC CTGCTGGCCA ACCTGAACTT CAGCGCCGAG GACGAGAGCC GCATGATGCA GCCGCTGCTC GACCACAAGG ATGCGCTGGA ATCGGCCCGC CAATGGCTCA AGGACCACCC CGACGACAAG GCCCGCTGGC TTGAGGGTGT GACCACCTTC GATGGCAAGC CGGCTGCGGA CAATCTGAAG CTTACCGCTA ACTGA
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Protein sequence | MHSLIRRSLL TLALSSIATS PLFAAEPAAC KNVRLGVVNW TDVIATSAMA QVLLDGLGYQ TKQTSASQQI IFAGIRDKRL DMFLGYWNPI MTQTITPFVD ANQVKVLDKP SLEDARATLA VPKYLYDKGL KTFADIHKFE KELGGKIYGI EPGSGANTQI KAMITKNQFD LGQFQLVESS EAGMLAAVDR AVRRKEAVVF FGWAPHPMNV NIDMAYLGDS QDALGPDEGR ATVWTVTAPD YAERCPNAHR LLANLNFSAE DESRMMQPLL DHKDALESAR QWLKDHPDDK ARWLEGVTTF DGKPAADNLK LTAN
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