| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0321 |
|---|
| Symbol | |
|---|
| ID | 5868061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 371231 |
|---|
| End bp | 372178 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641545403 |
|---|
| Product | choline ABC transporter, periplasmic binding protein |
|---|
| Protein accession | YP_001666570 |
|---|
| Protein GI | 167031339 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGTT CACCCTCGCT GTTGCTGGTT GCGTTGCTGT CCACGCCATT GCTGGCCCAG
GCCGCCGAAC CCGAGCAGTG TCAGACGGTA CGTTTCTCCG ATGTCGGCTG GACCGACATC
ACAGTCACGA CCGCGACCAC CAGCGTTGTG CTCGAAGCCC TGGGTTACAA AACCCACACC
ACCATGATCT CGGTACCGGT GACCTACAAG TCGCTGGCCA CCGGCAAGGA CCTGGACGTG
TTTCTCGGCA ACTGGATGCC GACCATGGAA AACGACATCA AGCAGTACCG CGACGCCGGC
ACGGTGGAAA CCGTGCGCGC CAACCTGGAA AACGCCAAGT ACACCTTGGC CGTGCCCCAG
GCGCTGTATG ACAAGGGCCT GAAGGATTTC AGCGATATTC CCAAGTTCAA GAAAGAACTC
GACAGCAAGA TCTACGGCAT CGAACCCGGC AACGATGGCA ACCGCACCAT CCAGAGCATG
ATCGACAAGA ACGCCTTCGG CCTGAAGGAC GCCGGTTTCA AGATCGTGCA ATCGAGCGAG
GCCGGCATGC TGTCGCAGGT CGACCGCGCG CAGAAGCGTG GCGAAGCGCT GGTGTTCCTG
GGCTGGGAAC CGCACCCGAT GAACACCCGC TTCAAGATGC AGTACCTGAC CGGCGGGGAC
GAATTCTTCG GCCCCGACTT CGGCAAGGCC ACCGTGCTGA CCAACACCCG CAAGGGCTAC
GCGCAGGAGT GCAGCAACGT TGGCCAGCTG TTGAAGAACC TGTCGTTCGA GCTCAAGGAT
GAAAGCACCA TGATGGGCTA TGTCCTGGAC GACAAGATGA AACCCGAAGC CGCCGCCAAG
AAATGGATCA AGGACAACCC AGGCAAGCTG GATGCCTGGC TGGCCGGCGT GACCACCGTG
GATGGCAAAC CTGGCCTGGA GGCGGCCAAG GCCAAGCTCA CGCAATAA
|
|---|
| Protein sequence | MKGSPSLLLV ALLSTPLLAQ AAEPEQCQTV RFSDVGWTDI TVTTATTSVV LEALGYKTHT
TMISVPVTYK SLATGKDLDV FLGNWMPTME NDIKQYRDAG TVETVRANLE NAKYTLAVPQ
ALYDKGLKDF SDIPKFKKEL DSKIYGIEPG NDGNRTIQSM IDKNAFGLKD AGFKIVQSSE
AGMLSQVDRA QKRGEALVFL GWEPHPMNTR FKMQYLTGGD EFFGPDFGKA TVLTNTRKGY
AQECSNVGQL LKNLSFELKD ESTMMGYVLD DKMKPEAAAK KWIKDNPGKL DAWLAGVTTV
DGKPGLEAAK AKLTQ
|
|---|
| |