Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0211 |
Symbol | hemC |
ID | 5867907 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 247946 |
End bp | 248887 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641545290 |
Product | porphobilinogen deaminase |
Protein accession | YP_001666460 |
Protein GI | 167031229 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.204763 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACTC GCGAAATCCG CATTGCCACC CGTAAAAGTG CCTTGGCCCT GTGGCAGGCC GAATACGTCA AAGCCCGTCT CGAGCAGGCT CACCCGGGTC TGCTGGTGAC CCTGGTGCCC ATGGTCAGCC GTGGTGACAA GCTACTCGAC GCGCCGCTGG CGAAAATCGG CGGCAAAGGC CTGTTCGTCA AGGAGCTGGA AACCGCCCTG CTGGACAACG AAGCCGACAT CGCCGTGCAT TCGATGAAGG ACGTGCCCAT GGACTTCCCC GAAGGCCTGG GCCTGTACTG CATCTGCGAG CGTGAAGACC CGCGTGACGC CTTCGTTTCC AATACGTTCG ACAGCCTCGA AGCACTACCT GCCGGCAGCA TCGTCGGCAC CTCCAGCCTG CGCCGCCAGG CCCAGTTGCT GGCGCGCCGG CCAGACCTGC AAATCCGCTT TCTGCGGGGC AACGTCAACA CCCGCCTGGC CAAGCTGGAT GCCGGCGAGT ACGACGCCAT CATCCTCGCC GCTGCTGGCC TGATCCGTCT GGGCTTCGAA GACCGCATCA CCTCCACCAT CAGCGTCGAT GACAGCCTGC CGGCTGGCGG CCAGGGCGCC GTGGGTATCG AGTGCCGCAG TGCCGACGTT GAGATTCATG CATTGCTGGC GCCACTGCAC CATGCCGATA CCGCCGACCG GGTGGTGGCC GAACGTGCCC TGAACAAGCA CCTGAATGGC GGCTGCCAGG TGCCGATCGC CTGCTATGCG GTGCTTGAAG GCGACCAGCT GTGGCTGCGT GGCCTGGTCG GCCAGCCGAG TGGCGGAACG CTGCTGGTGG CCGATGCCCG CGCCCCTCGC ACTGCTGCCG AAACCTTGGG CGTACAGGTA GCCGAGGACT TACTGAGCCA GGGCGCCGAG GCCATCCTCA AGGAAGTCTA TGGCGAGGCC GGCCACCCGT GA
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Protein sequence | MSTREIRIAT RKSALALWQA EYVKARLEQA HPGLLVTLVP MVSRGDKLLD APLAKIGGKG LFVKELETAL LDNEADIAVH SMKDVPMDFP EGLGLYCICE REDPRDAFVS NTFDSLEALP AGSIVGTSSL RRQAQLLARR PDLQIRFLRG NVNTRLAKLD AGEYDAIILA AAGLIRLGFE DRITSTISVD DSLPAGGQGA VGIECRSADV EIHALLAPLH HADTADRVVA ERALNKHLNG GCQVPIACYA VLEGDQLWLR GLVGQPSGGT LLVADARAPR TAAETLGVQV AEDLLSQGAE AILKEVYGEA GHP
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