Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0192 |
Symbol | |
ID | 5867889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 231845 |
End bp | 232333 |
Gene Length | 489 bp |
Protein Length | 162 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641545273 |
Product | Hcp1 family type VI secretion system effector |
Protein accession | YP_001666443 |
Protein GI | 167031212 |
COG category | [S] Function unknown |
COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.65069 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTTCG ATGCCTATAT TCAAATCGCG GAAATCGCTG GCGAAGCAAA AGACGAGCAA TACAGCAACT GGATCGAGAT CCTCGGTTAC ACATTTGGTG CCAGCCAAAG CACCTCCGTC ACCGCGAGTT CTGCAGGCGG CGCCACTTCC GGGCGCACCA CGCTGAGCAA TCTGACCTTC ACCAAGTACC TGGACAACGC CAGTTGCAAA CTGCTCGAAG CCAGTTGCGC GGGGCAGCAC CTGAAGGAAG TGAAGCTGGT CGTCTGCCGC GCCGGTAGCG ACAAGCTCAA GTACTACGAA GTGGTGCTCG AGGAAGTGAT CATCGCCGAC TACGCACAAA GCGCGCATGC CGGTGTGCCG ACTGAAATCG TTCAGCTCAA CTACGGCCGT ATCAAGACTA CCTACACCCG GCAGCAGCGC GTCGACGGCA GTGCTGGCGG CAATGTGACC GGTGGCTGGG ACCGAATTGC CAACAAGAAG TTTGCGTGA
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Protein sequence | MAFDAYIQIA EIAGEAKDEQ YSNWIEILGY TFGASQSTSV TASSAGGATS GRTTLSNLTF TKYLDNASCK LLEASCAGQH LKEVKLVVCR AGSDKLKYYE VVLEEVIIAD YAQSAHAGVP TEIVQLNYGR IKTTYTRQQR VDGSAGGNVT GGWDRIANKK FA
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